Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bxe_A1670 |
Symbol | dapD |
ID | 4003359 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia xenovorans LB400 |
Kingdom | Bacteria |
Replicon accession | NC_007951 |
Strand | + |
Start bp | 3064391 |
End bp | 3065218 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637947956 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_559337 |
Protein GI | 91784131 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.0925353 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0215515 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCAAC AACTTCAGCA GATCATTGAC ACCGCCTGGG AAAACCGCGC CGAGCTGTCG CCGAAGGCCG CTCCGGCCGA CGTGCGCGAA GCCGTCGCCC ACGCCATCGA GCAACTGGAC AAGGGCCTGC TGCGCGTCGC CGAGAAGAAA GACGGCGACT GGGTCGTCAA TCAATGGCTG AAGAAAGCCG TACTGCTGTC GTTCCGCCTG GAAGACAACG CGCCGATGCC GGCCGGCGGC TACTCCCAGT TTTACGACAA GGTGCCGTCG AAGTTCGCCA GCTACACCGC TGAAGACTTC GCGGCCGGCG GCTTTCGCGT GGTGCCGCCC GCCATCGCGC GCCGCGGCTC GTTCATCGCG AAGAACGTCG TGCTGATGCC GTCGTACACC AACATCGGCG CGTACGTGGA CGAAGGCACG ATGGTCGATA CGTGGGCCAC CGTCGGTTCC TGCGCGCAGA TCGGCAAGAA CGTTCACCTG TCGGGCGGCG TGGGCATCGG CGGCGTGCTG GAGCCGCTGC AGGCAAACCC GGTGATCATT GAAGACAACT GCTTCATCGG CGCGCGCTCG GAAGTGGTGG AAGGCGTGAT CGTCGAGGAA AACTCGGTGA TCTCGATGGG CGTGTACCTC GGCCAGAGCA CGAAGATTTA CGACCGCGAA ACCGGCGAAG TCACGTATGG CCGCATTCCT GCGGGCTCGG TGGTGGTGGC GGGCAACCTG CCGTCCAAAG ACGGCACGCA CAGCCTGTAC TGCGCCGTGA TCGTCAAGAA GGTGGACGCC AGGACGCGTG CGAAGGTCGG CCTGAACGAG CTGCTGCGAG GCGACTGA
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Protein sequence | MSQQLQQIID TAWENRAELS PKAAPADVRE AVAHAIEQLD KGLLRVAEKK DGDWVVNQWL KKAVLLSFRL EDNAPMPAGG YSQFYDKVPS KFASYTAEDF AAGGFRVVPP AIARRGSFIA KNVVLMPSYT NIGAYVDEGT MVDTWATVGS CAQIGKNVHL SGGVGIGGVL EPLQANPVII EDNCFIGARS EVVEGVIVEE NSVISMGVYL GQSTKIYDRE TGEVTYGRIP AGSVVVAGNL PSKDGTHSLY CAVIVKKVDA RTRAKVGLNE LLRGD
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