| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A0907 |
|---|
| Symbol | |
|---|
| ID | 4002825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007951 |
|---|
| Strand | - |
|---|
| Start bp | 3885517 |
|---|
| End bp | 3887874 |
|---|
| Gene Length | 2358 bp |
|---|
| Protein Length | 785 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637948731 |
|---|
| Product | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA |
|---|
| Protein accession | YP_560090 |
|---|
| Protein GI | 91784884 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.979271 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGA CCCCGCCCAC CGCCACGGAA GTGGAACACG ACGCCGACTC GCCCTCGTCT
GCACGCAAGT ACATCGACGC GGTCCTCGAA CAGTCGTTTC GCCATCTGTT CGGCCCCACC
GCCACGCCGG AGCAACCGCG CCGGCATGAC GTAGTCTCCA TTGCCAAGCT GACCTCCGCC
TTATCCGGCT ATCTGCAGCC GGAAGAGATC AAGGAAGTCA AGGCGGCCTT CCATTTCAGC
GACGAAGCCC ACCTCGGCCA GTACCGCCAG AGCGGCGAGC CTTACATCAC GCATCCGGTT
GCCGTCGCGG AAATCTGCGC CGGCTGGAAT CTCGACGCCC AGTCGATCAT GGCGGCGCTG
CTGCATGACG TGATGGAAGA CCAGGGCGTG ACCAAGGCCG AACTCGCCGA GCGTTTCGGC
GCGAAGGTCG CGGAACTGGT CGACGGCTTG TCCAAGCTCG ACAAGATGGA GTTTCGCAAT
CGCGAGGAAG CGCAGGCGGA AAACTTCCGC AAGATGCTGC TCGCAATGGC GCGCGACGTC
CGCGTGATTC TGGTGAAGCT CGCCGACCGG CTGCACAACA TGCGCACGCT GGGTGCCGTG
CCGGCCGAAA AACGCCGCCG CGTGGCGCGC GAAACGCTGG ATATCTATGC GCCGATCGCT
CACCGGCTGG GCCTGAACAA TACGTATCGC GAGTTGCAGG ACCTGAGCTT CGCGAACTTC
AATCCGCACC GGTACGCCAC GCTCGAAAAA GCCGTCAAGG CGGCGCGCGG CAACCGGCGC
GAAGTGGTCG GCAAGATTCT CGAGTCGGTG CAGCGCGCGA TTGCCGACGC GAAGCTCGAC
GCCGAAGTCA CCGGCCGCGA AAAAACCATC TTCAGCATCT ACAAGAAGAT GCGCGACAAG
CAGTTGTCGT TCTCGCAGGT GCTCGACGTG TATGGCTTTC GCGTCGTGGT GGAAAGCGCG
CTGGAGTGCT ACACCTGCAT CGGCGCGCTG CATGCGTTGT ACAAGCCGGT GCCGGGCAAG
TTCAAGGATT ACATCGCCAT CCCGAAGGTG AACGGCTACC AGTCGCTGCA CACCACGCTG
GTCGGCCCGT TCGGCGCGCC GATCGAGTTT CAGGTGCGCA CGCGCAAGAT GCACGAAATC
GCCGAAGCGG GCGTGGCCGC GCACTGGCTG TACAAGAACG GCGGCGCCGA TCTGAACGAC
GTGCAGAAGC GCGCGCACCA ATGGCTGAAG TCGCTGCTCG ACATTCAGAG CGAAGCAGGC
GATTCGAGCG AATTCCTCGA GCACGTCAAG ATCGATCTGT TCCCGGACGC GGTGTACGTG
TTCACGCCGA AGTCGAAGAT CATGGCGCTG CCGCGCGGCG CCACGGCGCT CGACTTCGCG
TATTCGATCC ACAGCGACCT GGGCAACCAG TGTGTCGCGG TGAAGATAAA CAATGAACTG
CTGCCGCTGC GCACCGAGCT GAAGAGCGGC GATATCGTCG AAGTCATCAC GGCGCCGTAT
TCGAAGCCGA ATCCAGCGTG GCTCGGATTC GTGCGCACCG GCAAGGCGCG GTCGGCGATC
CGCCATTATC TGAAGACCAT GCGCCTGAAC GAGTCCGTTC AGCTTGGTGA GCGTCTGGTC
GATCAGGCGC TGAAGGGTTA TGGGCTGGCG CTCTCGGACG TCACGCCGGA AGCGTGGGAA
AAGCTCGTGC AGTGGACGGG CAACAAGAAC CGCCAGGAAA TTTTCGCGGA CATCGGCCTT
GGCCGGCGTG TCGCGGCGGT CATGGCCAAG CGCATCGAAG TGCTGATGAG CGGCCGCGAC
GCCGACGACG ACGGCTCGCG CTCCGACAGC AACGCGCCGC ATGCGCCGCC GGTGGTCATC
ACCGGTACGG AGGGCATGTC GGTGCAACTG TCCGCATGCT GCCGTCCGAT TCCGGGCGAC
GACATCATGG GCTATATCGG CATCGGCCTC GGCATGGCCA TTCACACCAC GGATTGCCGC
GTCGCGCAGC GTATCCACCG GCGCGATCCG GGCCGCTGGA TCGACGTTGC CTGGGCGCCG
CAACCGGGGC GTCTGTTCGA CGTCGCCGTG AAGGTGCTGG TCAAGAACAC CAAGGGCGTG
TTTGCGCGCG TGGCGGCGGA TATTACGTCG GCGGATGCCA ACATCGTCCA CATTGCAATG
GACGAAGATC TGTCGCAGGA ATCCACGGTG TTGCGCTTCG TGATTCAGGT CAGCGACCGC
GTCCATCTGG CCAACGTGAT GCGCCGTGTG CGCACGAACC CGGACGTCAT GCGCATTGCA
CGCGAACGGC CGAGCGAGGA AGGCCATCAC CGTCACGAGG GCGGGATGCG GATCGACCGC
GAGCGGGCGG ACTACTGA
|
|---|
| Protein sequence | MSTTPPTATE VEHDADSPSS ARKYIDAVLE QSFRHLFGPT ATPEQPRRHD VVSIAKLTSA
LSGYLQPEEI KEVKAAFHFS DEAHLGQYRQ SGEPYITHPV AVAEICAGWN LDAQSIMAAL
LHDVMEDQGV TKAELAERFG AKVAELVDGL SKLDKMEFRN REEAQAENFR KMLLAMARDV
RVILVKLADR LHNMRTLGAV PAEKRRRVAR ETLDIYAPIA HRLGLNNTYR ELQDLSFANF
NPHRYATLEK AVKAARGNRR EVVGKILESV QRAIADAKLD AEVTGREKTI FSIYKKMRDK
QLSFSQVLDV YGFRVVVESA LECYTCIGAL HALYKPVPGK FKDYIAIPKV NGYQSLHTTL
VGPFGAPIEF QVRTRKMHEI AEAGVAAHWL YKNGGADLND VQKRAHQWLK SLLDIQSEAG
DSSEFLEHVK IDLFPDAVYV FTPKSKIMAL PRGATALDFA YSIHSDLGNQ CVAVKINNEL
LPLRTELKSG DIVEVITAPY SKPNPAWLGF VRTGKARSAI RHYLKTMRLN ESVQLGERLV
DQALKGYGLA LSDVTPEAWE KLVQWTGNKN RQEIFADIGL GRRVAAVMAK RIEVLMSGRD
ADDDGSRSDS NAPHAPPVVI TGTEGMSVQL SACCRPIPGD DIMGYIGIGL GMAIHTTDCR
VAQRIHRRDP GRWIDVAWAP QPGRLFDVAV KVLVKNTKGV FARVAADITS ADANIVHIAM
DEDLSQESTV LRFVIQVSDR VHLANVMRRV RTNPDVMRIA RERPSEEGHH RHEGGMRIDR
ERADY
|
|---|
| |