| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A0351 |
|---|
| Symbol | |
|---|
| ID | 4006067 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007951 |
|---|
| Strand | + |
|---|
| Start bp | 4487730 |
|---|
| End bp | 4488992 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637949286 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_560634 |
|---|
| Protein GI | 91785428 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0103305 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCGAT CCGCATTTGA CTACGTCGAC GGCGTGCTGC ATGCCGAAGG CGTATCCGCC
GTTTCCCTCG CCGAGCAGTT CGGCACGCCG CTGTACGTGT ATTCGCGCGC CGCGCTCACC
GCGGCGTGGA ACGCTTACGC CGGCGCTTGT GCCGGCCGCC GCGCAAGCGT GCACGTCGCC
GTCAAGGCCA ATAGCAACCT CGCGGTGCTG AATGTGTTCG CGCGCCTCGG CGCCGGCTTC
GACATCGTGT CCGGCGGCGA ACTGGCACGC GTGCTGGCCG CTGGCGGCAA AGCGGAAAAC
ACGGTGTTTT CCGGCGTCGG CAAGAACGCG AACGAAATGC GCGAGGCGCT CGCCGCCGGC
GTGAAATGCT TCAACGTCGA ATCGATTCCC GAGCTCGACC GCCTGAATGC GGTCGCGGCG
GAAATGGGCA AGAAGGCGCC CGTCTCGCTG CGCGTGAATC CCGACGTCGA CGCAAAGACG
CATCCGTATA TCTCCACCGG CCTCAAGTCG AACAAGTTCG GCGTCGCATT CGAAGACGCG
CGCGCCACGT ATCAGGCGGC CGCGGGCATG GCGAATCTCG AAGTGGTGGG TATCGACTGC
CATATCGGCT CGCAGATCAC CGAAGCCGCC CCGTATCTGG ACGCGGTCGA CAAGGTGCTG
GAACTGGTCG AACAGATCGA GCAGGACGGC CTGAAGATTC GCCACATCGA CGTAGGCGGC
GGCCTCGGCA TCACGTACGA CGACGAAACG CCGCCGGAGA TCGGCGAGTT CGTGCGCACC
GTGCTCGATC GCATCGAAGC GCGCGGTCAC GGCCATCGTG AAGTGTATTT CGAGCCGGGC
CGCTCGCTGG TCGGCAATGC AGGCGTGCTG CTTACGCGCG TCGAATTTCT GAAGCCGGGC
GCGGAAAAGA ATTTCGCCAT CGTCGACGCG GCCATGAACG ATCTCGCGCG CCCCGCCATG
TATGAGGCGT ATCACGCAAT CGATCCCGTC GTGAAGCGCG ACGTGCCGGC CCACGTGTAC
GACGTGGTCG GTCCGGTTTG CGAGAGCGGC GACTGGCTCG GCCGCGAACG CCTGCTGGCG
GTGGAACCGG GCGATCTGCT GGCAATCCGC TCGGCCGGCG CGTACGGCTT CGTGATGAGC
TCCAACTACA ACACCCGTCC GCGTGCGGCC GAGGTGATGG TTGATGGTAC ACAAGTGCAT
GTGGCACGCG CCCGCGAAGA GGTCAGGCAA CTGTTTGTGG GCGAAACGAT TTTGCCAGCG
TAA
|
|---|
| Protein sequence | MTRSAFDYVD GVLHAEGVSA VSLAEQFGTP LYVYSRAALT AAWNAYAGAC AGRRASVHVA
VKANSNLAVL NVFARLGAGF DIVSGGELAR VLAAGGKAEN TVFSGVGKNA NEMREALAAG
VKCFNVESIP ELDRLNAVAA EMGKKAPVSL RVNPDVDAKT HPYISTGLKS NKFGVAFEDA
RATYQAAAGM ANLEVVGIDC HIGSQITEAA PYLDAVDKVL ELVEQIEQDG LKIRHIDVGG
GLGITYDDET PPEIGEFVRT VLDRIEARGH GHREVYFEPG RSLVGNAGVL LTRVEFLKPG
AEKNFAIVDA AMNDLARPAM YEAYHAIDPV VKRDVPAHVY DVVGPVCESG DWLGRERLLA
VEPGDLLAIR SAGAYGFVMS SNYNTRPRAA EVMVDGTQVH VARAREEVRQ LFVGETILPA
|
|---|
| |