Gene Bxe_A0190 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBxe_A0190 
Symbol 
ID4006237 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia xenovorans LB400 
KingdomBacteria 
Replicon accessionNC_007951 
Strand
Start bp4642668 
End bp4644473 
Gene Length1806 bp 
Protein Length601 aa 
Translation table11 
GC content66% 
IMG OID637949454 
ProductTPR repeat-containing protein 
Protein accessionYP_560793 
Protein GI91785587 
COG category[M] Cell wall/membrane/envelope biogenesis
[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0859] ADP-heptose:LPS heptosyltransferase
[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACATC AATCCCAGCC TGAGCGCACG CACGCCGCCC CGCCGCACAC CGCCTATCTC 
ACCGCATTGA TCGACGCCGC GCTCGAAGCG CACCAGGCCG GTCGGCTCGA CGCCGCCGAA
TCGTTTTACC GCGAGGCGCT CACGCTCGAC AGCGCCCATA CGGGCGCACT GCACTACTTC
GGCGTGCTGC ATTATCAGCG CGGCGCTCAC GACATCGCCG CCAGCCTGAT GAGCCGCGCG
CTCAAACTCG ATCGTCACGA TGCCGCCTGC TGGAGCAACC GCGGGCTCGT GGCCGCCGCG
CTCGGCCATC TCGACGAAGC AATGATCTGC TACGACCAGG CACTGCAACT CCAGCCCGAT
TTCGCCGACG CGCACAACAA CTTCGGCGCC GCGTTACAAG CGCAAGGCGC GTTGCCGGAA
GCGGTCGAAC ACTACCGCCT GGCGCTGGCT TCCAACCCCA TGCTGCTCGA CGCGCATCTG
AACCTGGGCA CGGCGCTGAA CAAGCTCGCG CGTTTCGACG AAGCGCTGGC GTGCTATCGC
CATGTTCTGT CGCTCGATCC CGCCTCGGCG GAGGCGCACT TCAGCGCGGG TAATACCTAC
CAGGCGCGCG GCGACCACGG CGCGGCGATC GCCAGCTTCG AGCAGGCCGT GGCACTGCGT
GCGGATTACG CGGAGGCGCA CGTCAACCTG GGCAGCCTGA TCGGCAAGCT CGGCGACTAT
GCGGGCGCCG AATCGCACTA CCGGCGCGCG GTCGCGCTCA AACCGGTTCC GACTCATCTC
GTGTGTCTGG GCGGATCGCT CGGTGCGCAA GGGCGCCTCG ACGAAGAAGA AGGCTTCTAT
CGCCAGGCGC TCGCGCTCGA CCCGCACCAT GCGGACGCCC ATCAGAATCT GGCGTGGCTG
TTGCTCAAGC GCGGCGACTA CAAACAGGGC TGGGCGGAAT TCGCGCTGCG CTGGCGCAAG
ACCGACTACG AAGCGATCGC GGTGCCGGGC GTGCCGGAGT GGCGTGGCGA GCCGCTCGAA
GGGCGCCGTC TGCTGCTGGT CGGCGAGCAG GGTTTTGGCG ACCACTTCCA GTTTCTGCGC
TTTGCAAGCG TGCTCGCCCA ACGCGGCGCA ACCGTCGACC TCTGCGTGCG CGAACCGCTG
TTGCCTTTGG TCGAACGCGT GGCGGGTGTG CGTCGCGCGT ATAGCGGCAA GCCCGATGGC
GAATACGATT TCTGGGTGCC GATGATGAGC ATCCCATCCT GCCTCGGCCT GGAGCTTTCC
ACCATTCCCG CGGACGTGCC CTATCTGTCC GCCGACAAGG CAAAGATCAA GGCATGGCGC
AAGCGGCTCG GCGCGGCCGA CAAATCGGCG CGCAAGGTGG GGCTCGTCTG GGCCGGCAGC
CCGACATTCG GCAACGACCG TTACCGGTCG ATCCCGCTGT CCGACCTGAG CGCGCTCCGC
GGCTTAAAGA ACGTGGCCTG GTACGCGCTG CAAAAAGGCC CGGCGCATGC GCAACTGGCC
GCTGCGCCGC CGGCTTTCAG CGCACACGAT TTCACCGCCG GGCTGAACGA TTTCGAAGAC
ACGGCGGCGT TGATCATGAA TCTCGATCTG GTGATCGCGG TGGACACCGG CGTTGCGCAT
CTGGCGGGGG CGTTGGGCAA GCCAGTATGG TTACTGTTGC CCGCCAATTC CGACTGGCGC
TGGCTGGAAG CGCGCAGCGA CTCGCCGTGG TATCCAGGAA TGAGGCTGTT CCGGCAGGCG
GTGTTAGGGG ATTGGGTGCC GGTGGTTGAC GAAGTGGCCA AGGCACTGCA CGACGGCGCC
CATTGA
 
Protein sequence
MEHQSQPERT HAAPPHTAYL TALIDAALEA HQAGRLDAAE SFYREALTLD SAHTGALHYF 
GVLHYQRGAH DIAASLMSRA LKLDRHDAAC WSNRGLVAAA LGHLDEAMIC YDQALQLQPD
FADAHNNFGA ALQAQGALPE AVEHYRLALA SNPMLLDAHL NLGTALNKLA RFDEALACYR
HVLSLDPASA EAHFSAGNTY QARGDHGAAI ASFEQAVALR ADYAEAHVNL GSLIGKLGDY
AGAESHYRRA VALKPVPTHL VCLGGSLGAQ GRLDEEEGFY RQALALDPHH ADAHQNLAWL
LLKRGDYKQG WAEFALRWRK TDYEAIAVPG VPEWRGEPLE GRRLLLVGEQ GFGDHFQFLR
FASVLAQRGA TVDLCVREPL LPLVERVAGV RRAYSGKPDG EYDFWVPMMS IPSCLGLELS
TIPADVPYLS ADKAKIKAWR KRLGAADKSA RKVGLVWAGS PTFGNDRYRS IPLSDLSALR
GLKNVAWYAL QKGPAHAQLA AAPPAFSAHD FTAGLNDFED TAALIMNLDL VIAVDTGVAH
LAGALGKPVW LLLPANSDWR WLEARSDSPW YPGMRLFRQA VLGDWVPVVD EVAKALHDGA
H