| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_5455 |
|---|
| Symbol | |
|---|
| ID | 4016414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007950 |
|---|
| Strand | - |
|---|
| Start bp | 207754 |
|---|
| End bp | 209022 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637945075 |
|---|
| Product | conjugation TrbI-like protein |
|---|
| Protein accession | YP_552207 |
|---|
| Protein GI | 91791257 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0206751 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGATA ACCTCCTTTC CCCCAAAACC ACCGCGCCGA CGGGCGTCCC GCCCAAGAAC
ATCTTGGCGT TTTTGGGTAT TGGCATCCTA TTGGCCATTG GCTGCTATTC GTGGTACAGC
GACGTTTCTA CACCTACGAA AGGTGAGGAC GCTAGCAAAA AGGTCACGTT GCAGGAAGCA
ACCGCGGCAA AAGACGCTGG CGTCAAGGGC GACCCGAAGG ATGTGACCGC ATTTGCTGAC
AAGGCGGGTG TGCCAGCTGC GCTTCGCGGA GACGCGGCCG CCAAGGCACC GCTGCCCAGC
GCTTCAGCTC CTGACACGGG TGTGCGGCCG CAGCCGTTCC CGGTCGATCT TGGCAGTCCG
CCGGCGAGCT CCAAACTTGG CACTGCGGCT TCACTAGAAG CCGTCCGCGA GACAGAGATT
TCCAATGCCA AGCCGGTGGT ATTTGACCAG GCGCTCGCGC CGGCACAAGC TCCCTCCGAG
AAGCTGGACC CGATTTCCCA ACTCATCGAA CAGGAAAAGA TCGCGCAGGC GCGAAGGGAA
GCAGCGTCGG CTAAAGCAGG AGATCTGTCC CAGGTCTCGG GCCTTCTCAA TTCTCAGCGG
CCGCAGCAGG CCCCCGCTGG CCGTGCAGCA GACAAGTCTT GGTTGAAAGA ATTCGCCCCT
TCACGGAAAG ACCCTGGTCT TCTTCCGTCG CTCCCTGAAG CACCTTTGAT GCTGACTCAA
GGTAGCGTGA TCGAGGCTGT GACACTTCGG GAGATCAACA GCGACCTCCC GGGCGTCATC
ACCGCGCGCA CCACGCGCGA CATCTATGAC TCCACTACCC AGCGCAACCT GGTATTGCCG
AAGGGCACGC TGGCAATTGG CGAATACTCA TCGGACGTGC GCATGGGCCA GGAACGGCTG
TTGTTTGCTT TCACCCGGCT TGTGCTTCCC AACGGTCAGT CGTTCGATCT TGGATCCTTC
AACGGCGGGG ATGCAGCCGG CCGAGCGGGG GTGAAAGGCG ACGTTGACAA CCACTATTTT
CGCTTGTTTG GAACAAGCCT CCTGATCGGT CTTCTGGCAG ACCGCGTCGT ATCGACGAAG
GCCGTTCCAC AGGGAACCAA TGGTCAAGCC GGCGGGCTGT CGGCGACCGG CCAGATCCTG
ACCGACACCG CGAAGTCCAT TCTTGAGCGG AACCGCGAAG TGGCACCGAC CATCAGCATC
CCCTCGGGCG CGAGGGTCGT TATTGAAGTC CGGCGCGACA TGCTTTTCCC TTCTCCCTTT
CGAGGTTAG
|
|---|
| Protein sequence | MADNLLSPKT TAPTGVPPKN ILAFLGIGIL LAIGCYSWYS DVSTPTKGED ASKKVTLQEA
TAAKDAGVKG DPKDVTAFAD KAGVPAALRG DAAAKAPLPS ASAPDTGVRP QPFPVDLGSP
PASSKLGTAA SLEAVRETEI SNAKPVVFDQ ALAPAQAPSE KLDPISQLIE QEKIAQARRE
AASAKAGDLS QVSGLLNSQR PQQAPAGRAA DKSWLKEFAP SRKDPGLLPS LPEAPLMLTQ
GSVIEAVTLR EINSDLPGVI TARTTRDIYD STTQRNLVLP KGTLAIGEYS SDVRMGQERL
LFAFTRLVLP NGQSFDLGSF NGGDAAGRAG VKGDVDNHYF RLFGTSLLIG LLADRVVSTK
AVPQGTNGQA GGLSATGQIL TDTAKSILER NREVAPTISI PSGARVVIEV RRDMLFPSPF
RG
|
|---|
| |