| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4928 |
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| Symbol | |
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| ID | 4015880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007949 |
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| Strand | - |
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| Start bp | 23188 |
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| End bp | 24945 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637944568 |
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| Product | Type I secretion system ATPase, PrtD |
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| Protein accession | YP_551700 |
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| Protein GI | 91790749 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTCAAA ACACAGCGGT AGCACCGCGC AACGAGATAC GAGCGGTTTT GACCAGCTAT
GCCGGGGCAA TTCGTTCAGT GGGGTTCTTT AGCATGGTGG TCAACCTGCT ATTCCTGGTG
CCGTCGGTCT ATATGTTACA AGTGTATGAC CGTGTATTGC CAAGCCGCAA TGAATATACG
CTGTTGATGC TGACGGGCAT TGTTTTGGGC CTGTATGTTT TCTCGGGGGC GCTGGAGTAT
GTGCGTAGCC TGGTGGTGAT ACGTCTCGGG GAGCGCATGG ATGCCCAACT GAGCCGCCGG
CTGCATACCG CGGCGTTCGA ACACAACTTG CGCCAGGCGG GGGGCAACGC GGGGCAGTCG
ATTCAGGACC TGACCACGCT ACGCCAATTT GTGACCGGCA ACAGCCTGTT TGCCTTTTTT
GACGCCCCGT GGTTTCCGAT CTACCTGGTG CTGATTTTCA TTTTCAACAC AACGCTGGGC
TTGTTTGCGC TGGCGGGCAC GTTGCTGCTG GTGACGTTGG CCTGGGTGAA CGAAGCGGCC
ACGCGCGGCC TGATGGCAGA CGCCAGCAGT GCGGCCGTGG CGTCGGGCAA CCTGGCTACC
AACAGCCTGC GAAACGCGGA GGTGATTCAG GCCATGGGCA TGCTGCCGGG GCTACAGCGC
CGCTGGTATG AATTGCACCA GCGCTTCGTG CGCCTGCAGT CGGACGCCAG CCAGCGGGCG
GCGGTGATTG CCGCATTTAC GCGATTTGTT CGCACGGGGC AGCAGTCGCT GGTGTTGGGT
CTGGGTGCCT TGCTGGTGAT CGAGGGAAGC ATTTCGGCGG GCATGATGAT CGCGGCGTCC
ATTCTCGTCG GCCGCGCCTT GAGTCCGGTG GAGCAGTTGA TCGGCGCATG GCGCCAATGG
AGCGCCGTTA AAAGCGCCTA CGGCCGCATG GCGACGCTGC TGGCCACTTA CCCGGAGCAG
CCGACGGGCA TGGCGCTGCC GGCGCCACGA GGCCGACTGA CGCTGGAATC CGTAACCGCC
GCACCTCCGG GCGCGCAAGT GCCGGTGCTG CGCAATGTCA GTTTTGAGCT GGTCCGGGGA
GACGTGCTGG GCGTGGTGGG GCCGAGCGCC TCGGGCAAGT CCACCCTGGC GCGGCTGCTG
GTGGGTGTGT GGCCGGCCTC GGCCGGCAAG GTGCGGCTGG ATGGAGCCGA CGTGTACCTC
TGGAACAAGC AAGAGCTCGG TCCGTCGGTG GGTTACTTGC CGCAAGATAT TGAGCTGTTT
GCCGGCACGA TTAGCGAAAA CATTGCCCGG TTTGGTGAGG TGAACGGCCC GCAGGTAATT
GAGGCCGCCC AACTGGCGGG CGTGCATGAG CTGATCCTGA AGTTGCCGCA GGGCTACGAC
ACGCCCCTGG GTGATGGGGG CGCGGGCCTG TCGGGAGGGC AGAAGCAGCG CATCGGGCTG
GCGCGTGCCT TGTACGGGCA GCCGGCCTTG CTGGTCCTGG ACGAGCCCAA CTCCAACCTG
GACGACGCGG GCGAAAATGC GCTGGTTCAG GCGATTGCAC GCATGCGCGA GGCCGGCAGT
ACGGTCGTGC TGGTGGCGCA CAGGGGCCAG ATTCTCAAAA CCACCAGCAA GCTGCTGGTG
TTGCGCGACG GCGTGGTGCA GTTGTTCGGC CCGCGCGATG GTGTGCTACA GGCGCTCGCC
CAGGCTGCCC GTGAATCAGC TGACAAGGCT GGTGACGCGA AAGTGTCTGC GCGCCCGCTT
GCCGCCGTCA GCGCATGA
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| Protein sequence | MGQNTAVAPR NEIRAVLTSY AGAIRSVGFF SMVVNLLFLV PSVYMLQVYD RVLPSRNEYT
LLMLTGIVLG LYVFSGALEY VRSLVVIRLG ERMDAQLSRR LHTAAFEHNL RQAGGNAGQS
IQDLTTLRQF VTGNSLFAFF DAPWFPIYLV LIFIFNTTLG LFALAGTLLL VTLAWVNEAA
TRGLMADASS AAVASGNLAT NSLRNAEVIQ AMGMLPGLQR RWYELHQRFV RLQSDASQRA
AVIAAFTRFV RTGQQSLVLG LGALLVIEGS ISAGMMIAAS ILVGRALSPV EQLIGAWRQW
SAVKSAYGRM ATLLATYPEQ PTGMALPAPR GRLTLESVTA APPGAQVPVL RNVSFELVRG
DVLGVVGPSA SGKSTLARLL VGVWPASAGK VRLDGADVYL WNKQELGPSV GYLPQDIELF
AGTISENIAR FGEVNGPQVI EAAQLAGVHE LILKLPQGYD TPLGDGGAGL SGGQKQRIGL
ARALYGQPAL LVLDEPNSNL DDAGENALVQ AIARMREAGS TVVLVAHRGQ ILKTTSKLLV
LRDGVVQLFG PRDGVLQALA QAARESADKA GDAKVSARPL AAVSA
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