| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4713 |
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| Symbol | |
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| ID | 4012598 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 5001067 |
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| End bp | 5004045 |
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| Gene Length | 2979 bp |
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| Protein Length | 992 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637944359 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_551491 |
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| Protein GI | 91790539 |
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| COG category | [B] Chromatin structure and dynamics
[L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG5531] SWIB-domain-containing proteins implicated in chromatin remodeling |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000244341 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACTC TGGTGATTGC AGAAAAACCC TCGGTGGCAC AGGACATTGT GCGTGCCATC
ACGCCCACTG CGGGCAAGTT CGAGAAGCAC GACGAGTACT TCGAGAGCGA CGAGTGGCTG
GTCACCTCGG CCGTGGGACA CCTGGTGGAG ATCCAGGCGC CCGAGGAGTT TGACGTGAAG
CGCGGCAAGT GGAGCTTTGC CAACCTGCCG GTGATTCCGC CGTACTTTGA GGTCAAGCCC
ATTGACAAGA CCAGGACGCG GCTCAACGCC ATCGTCAAGC TGGCCAAGCG CAAGGACGTG
GGCGCCATCG TCAATGCCTG CGACGCGGGG CGTGAGGGCG AGCTGATCTT CCGGCTGATC
CAGCAGTACG CCAACAGCAA GCACCCGGTC AAGCGCCTCT GGCTGCAGTC CATGACGCCG
GCCGCGATCC GCGAGGGCTT TGACAGCCTG CGCAGCGAAA AACAGATGCA GGGCCTGGCC
GATGCCGCCC GCTCGCGTTC CGAGGCCGAC TGGATGGTCG GCATCAACGG CACCCGCGCC
ATGACCGCCT TCAATTCACG CGATGGCGGC TTCTTCCTGA CCACCGTGGG CCGCGTGCAG
ACGCCGACGC TGTCGGTGGT GGTGGAGCGC GAAGAGAAAA TCCGCAAATT TGTCAGCCGC
GACTACTGGG AGATCCATGC ATCTTTCCTG GCCGAAGCCG GCGAATACCC GGCCAAGTGG
TTCGACCCGA AATGGAAAAA GGCCGCGGCG AATGCCGACA ATGCCGAGCC CGACGCCGAG
CTGCGGGCCG ACCGCGTCTG GTCGGAGCGC GAAGCGCTGG CCATTGCCGA GGCGGTGCGC
GGCAAGGCCG CCACGGTCAC GGAAGAGTCC AAGCCGACCA CGCAGGCCGC CGGCCTGCTG
TTCGATTTGA CCTCGCTGCA GCGCGAAGCC AACGGCAAGT TCGGCTTTTC CGCCAAGACC
ACGCTGTCGA TTGCGCAAAG CCTGTACGAG CGCCACAAGG CGCTGACCTA CCCGCGTACC
GACTCGCGCG CGCTGCCCGA AGACTATTTG CCGGTGGTGA AGCAGACCTT TGAGATGCTG
GCCGACAGCG GTATGCGCCA CCTGGCGCCG CACGCGGCCA CGGCCATCAA AGGCAACTAC
ATCAAGCCCA GCAAGCGGAT TTTTGATAAC GCCAAGGTGA GCGATCACTT CGCTATTATC
CCAACCACAC AGGCGCCCAG TGGGCTGAGC GAGGCCGAGC AAAAGCTGTA CGACCTGGTG
GTGCGCCGCT TCATGGCGGT GTTCTACCCG AGCGCCGAAT ACCTGGTCAC GACCCGTATT
TCCCAGGCCG TGGGCTATAG TTTCAAGACC GAAGGCAAGG TGCTGGTCAA GCCCGGCTGG
CTGGCAATTT ACGGCAAGGA AGCGGCCGAT GAAGTGGCCG ATGCCAAGGA CGGCGACAAG
GGCCAGAGCC TGGTGCCGGT CAAGCCCGGT GAAATGGTAC GCGCCGAGGT GGTCGAGGCC
AAGGGTCTGA AGACCCGGCC GCCGGCACGC TACAGCGAAG CCACCCTGCT GGGCGCGATG
GAAGGCGCCG GCAAGACCAT AGACGACGAC GAGCTGCGTG AAGCCATGCA GGAAAAAGGC
CTGGGCACGC CGGCTACGCG CGCCGCCACC ATCGAGGGCC TGATTGCCGA GAAGTACATG
CTGCGCGAAG GGCGCGAACT GATCCCGACC GCCAAGGCCT TTCAGCTCAT GACGCTGCTG
CGCGGCCTGG GCGTGGAAGA GCTCTCCAAA GCCGAGCTGA CCGGCGAATG GGAATACAAG
CTGGCGCAGA TGGAGCACGG CAAGCTGAGC CGCGAAACCT TCATGGCCGA AATTGCCGCC
ATGACGGAAA ACCTGGTCAA CAAGGCCAAG GGCTACGACA AGGACACCAT CCCGGGCGAC
TACACGACGC TGCAAACGCC CTGCCCCAAT TGCGGCGGCG TGGTGAAGGA GAACTACCGC
CGCTACACCT GCACCGGCAA AAACGGCGGC GATGGTTGCG GCTTTTCCTT CGGCAAGACG
CCGGCCGGCC GCACCTTTGA AACGGCCGAG GTCGAGCAGT TCCTGCGTGA CCGCAAGATC
GGGCCGCTGG AGGGGTTCCG CTCCAAGGCG GGCTGGCCCT TCACCGCCGA GATGGTGATC
AAGTTCGACG AGGAAACGAA GAACTACAAG CTCGAATTTG ATTTTGGTGA CGACAAGAAC
GGCGAGACCG GCGAGATTGT GGACTTCGGC GATCAGCAGT CGCTGGGCCC CTGCCCGCGC
TGCGCCGCCC GGGTGTTCGA GCTCGGCAAG AACTACGTCT GCGAAAAGTC CGTGCCCACG
CTGGAACAGC CCACGCCGAG TTGCACCTTC AAGACCGGCC AGGTGATTCT GCAGCAGCCC
ATCGAGCGCG AGCAAATGCA CAAGCTGCTG GAAACCGGCA AGACCGACCT GCTGGACAAG
TTTGTCTCGA TGCGCACGCG CCGCCCGTTC AAGGCCATGC TGGCCTGGGA CAAGGAGGCC
GACAAGGTGA ACTTCGAGTT CGCGCCGTCC AAGTTCCCGC CGCGCAAACC GGCGGCCGCC
AAGACGGGGG TCGTGAAGAC GCCATTCGGC AAGACGGTGG CGGCCAAAGG GGCCGCGGGC
GATGCGGCGC CGGCGGCGAA GAAAGCTGCG GCCAAAAAGG TCGCCGCCAA AAAGGCGCCG
GCCAAGACGG CCGCACCCAA GGTGGCGCGC AAGGCCGCGA CTCCAAAGCC GGGGGCCGGC
CTCAAGCCCA GCGACTCGCT CGCCGCGGTG ATTGGCGCCG AACCGGTGGC TCGCACCCAG
GTGATCAAGA AGCTGTGGGA CTACATCAAG GCCGAGGGCC TGCAGGACGC CGCCAACAAG
CGCGCCATCA ATGCCGACGC CAAGCTGCTG CCGGTGTTCG GCAAGCCGCA GGTGACGATG
TTCGAACTGG CCGGGATTGT GGGCAAGCAT TTGAGCTGA
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| Protein sequence | MKTLVIAEKP SVAQDIVRAI TPTAGKFEKH DEYFESDEWL VTSAVGHLVE IQAPEEFDVK
RGKWSFANLP VIPPYFEVKP IDKTRTRLNA IVKLAKRKDV GAIVNACDAG REGELIFRLI
QQYANSKHPV KRLWLQSMTP AAIREGFDSL RSEKQMQGLA DAARSRSEAD WMVGINGTRA
MTAFNSRDGG FFLTTVGRVQ TPTLSVVVER EEKIRKFVSR DYWEIHASFL AEAGEYPAKW
FDPKWKKAAA NADNAEPDAE LRADRVWSER EALAIAEAVR GKAATVTEES KPTTQAAGLL
FDLTSLQREA NGKFGFSAKT TLSIAQSLYE RHKALTYPRT DSRALPEDYL PVVKQTFEML
ADSGMRHLAP HAATAIKGNY IKPSKRIFDN AKVSDHFAII PTTQAPSGLS EAEQKLYDLV
VRRFMAVFYP SAEYLVTTRI SQAVGYSFKT EGKVLVKPGW LAIYGKEAAD EVADAKDGDK
GQSLVPVKPG EMVRAEVVEA KGLKTRPPAR YSEATLLGAM EGAGKTIDDD ELREAMQEKG
LGTPATRAAT IEGLIAEKYM LREGRELIPT AKAFQLMTLL RGLGVEELSK AELTGEWEYK
LAQMEHGKLS RETFMAEIAA MTENLVNKAK GYDKDTIPGD YTTLQTPCPN CGGVVKENYR
RYTCTGKNGG DGCGFSFGKT PAGRTFETAE VEQFLRDRKI GPLEGFRSKA GWPFTAEMVI
KFDEETKNYK LEFDFGDDKN GETGEIVDFG DQQSLGPCPR CAARVFELGK NYVCEKSVPT
LEQPTPSCTF KTGQVILQQP IEREQMHKLL ETGKTDLLDK FVSMRTRRPF KAMLAWDKEA
DKVNFEFAPS KFPPRKPAAA KTGVVKTPFG KTVAAKGAAG DAAPAAKKAA AKKVAAKKAP
AKTAAPKVAR KAATPKPGAG LKPSDSLAAV IGAEPVARTQ VIKKLWDYIK AEGLQDAANK
RAINADAKLL PVFGKPQVTM FELAGIVGKH LS
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