Gene Bpro_4645 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBpro_4645 
SymbolsecD 
ID4012686 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas sp. JS666 
KingdomBacteria 
Replicon accessionNC_007948 
Strand
Start bp4927781 
End bp4929655 
Gene Length1875 bp 
Protein Length624 aa 
Translation table11 
GC content62% 
IMG OID637944294 
Productpreprotein translocase subunit SecD 
Protein accessionYP_551426 
Protein GI91790474 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCGTT ATCCGGCCTG GAAGTACGCC ATTATTGTGG TCGCGCTATT GATCGCAGCC 
CTGTACACGC TGCCCAACTT TTTTGGCGAA GCGCCGGCAG TGCAGATTTC CAGCGGCAAG
TCCACGGTCA AGATTGACAC GACGACGATG GCGAGGGTGG AACAGGCGCT CAAGGATGTG
GGCATCACGG CGGATGTCAT CGCCCTGGAG GGTACTTCGG TCAAGGCACG CTTTGGCGAT
ACCGATACCC AGCTCAAGGC GAAAGACGCC GTCCAGAAGG CGCTGTCGCC CGATCCCGCG
AATCCGTCGT ATGTGGTCGC GCTCAACCTG CTGTCGCGCT CACCCGCCTG GCTGACTTCG
CTGCACGCGT TTCCCATGTA CCTGGGGCTG GACCTGCGTG GCGGCGTGCA TTTCATGCTG
CAGGTGGACA TGCAGGCGGC GCTGACCAAA CGGGCCGAGT CCCTGTCGGG CGACATTCGC
CTGTCGCTGC GCGAAAAAAA TATCCGCCAT GGTGGCATCA GCCGCAATGC CCAGGCCATT
GACATCAAGG TTCGCGACAG CGAGACCCTG GCCTCTGCCA AGGCGCTGAT CCAGGATCAG
TTTCCGGACC TGCAGACCGT CGATGTCCCG GAGGGCACGG AGTACAAGCT GACGGCCAGC
ATCAAGCCCG AGGCGGCGCG CCGGATCCAG GATCAGGCGC TCAAGCAGAA CATGGTCACG
CTGCACAACC GGATCAACGA GCTGGGCGTG GCCGAGCCGG TGATTCAGCA GCAGGGCCTG
GACCGTATCG TGGTGCAATT GCCGGGTGTT CAGGATACGG CCAAGGCCAA GGACATCCTG
GGGCGTACAG CGACACTGGA GATGCGTCTC GTGGAAGACA GCGCCGAGGC GCGCGCTGCG
GAAAACAACA CCGGTGCCGT GCCGTTTGGC ACCGAGCGCT TTTTCGAGCG CAACGGGCAG
GCGGTGATTG TCAAGAAACA GGTGATCCTG ACCGGCGAGA ACCTGACGGA TGCCCAGCCC
GGCTTTGACT CGCAGAACCA GCAGCCCAAA GTGGATCTGA CGGTCGATGC CAAGGGCGGC
CGCATCATGC GCGACACCAG CCGCGAGAAC CTGAAGAAAC GCATGGCCAT CCTGCTGTTT
GAAAAAGGCA AGGGCGAGGT CCTGACCGCG CCGGTCATCC AGAGTGAACT CGGCAACCGC
TTCCAGATTT CCGGCTCCAT GAGTGTGAGC GAAGCCAATG ACCTGGCCTT GCTGCTGCGC
GCGGGCTCCC TCGCCGCGCC CATGGAAATC ATTGAAGAGC GCACCATCGG CCCGACGCTG
GGTGCCGACA ATATTTCCAA GGGCTTTCAC AGCGTGTCCT GGGGTTTTGT CGTGATCGTG
GCCTTCATGG CGGCCTACTA CATGCTGTTC GGCCTGATCT CCGGCCTGGC GCTGGCGGTG
AACCTGCTGC TGCTCGTCGC GGTGCTTTCC ATGCTGCAGG CGACCCTGAC CTTGCCCGGC
ATGGCGGCCA TGGCACTGGC ACTGGGCATG GCCATCGACT CCAACGTGCT GATCAATGAG
CGCGTGCGCG AGGAATTGCG CAATGGCGCC TCGGCCCAGG CGGCCATTCA TGCGGGGTAT
GAGCGGGCCT GGGCCACCAT CCTGGACTCC AACACCTCGA CCCTGATTGT GGGCCTGGCA
TTGCTGGCCT TTGGTTCCGG CCCGGTACGC GGTTTTGCGG TGGTGCACTG CATCGGCATT
TTGACCAGCA TGTTCTCTGC GGTATTTTTC TCGCGTGGCC TGGTCAATCT CTGGTATGGC
CGGCAGAAAA AGCTCAAGAC GGTGTCCATC GGCACGGTGT GGCGGCCCGA CGCGTCCGGC
GCTGTGGCGA AATGA
 
Protein sequence
MNRYPAWKYA IIVVALLIAA LYTLPNFFGE APAVQISSGK STVKIDTTTM ARVEQALKDV 
GITADVIALE GTSVKARFGD TDTQLKAKDA VQKALSPDPA NPSYVVALNL LSRSPAWLTS
LHAFPMYLGL DLRGGVHFML QVDMQAALTK RAESLSGDIR LSLREKNIRH GGISRNAQAI
DIKVRDSETL ASAKALIQDQ FPDLQTVDVP EGTEYKLTAS IKPEAARRIQ DQALKQNMVT
LHNRINELGV AEPVIQQQGL DRIVVQLPGV QDTAKAKDIL GRTATLEMRL VEDSAEARAA
ENNTGAVPFG TERFFERNGQ AVIVKKQVIL TGENLTDAQP GFDSQNQQPK VDLTVDAKGG
RIMRDTSREN LKKRMAILLF EKGKGEVLTA PVIQSELGNR FQISGSMSVS EANDLALLLR
AGSLAAPMEI IEERTIGPTL GADNISKGFH SVSWGFVVIV AFMAAYYMLF GLISGLALAV
NLLLLVAVLS MLQATLTLPG MAAMALALGM AIDSNVLINE RVREELRNGA SAQAAIHAGY
ERAWATILDS NTSTLIVGLA LLAFGSGPVR GFAVVHCIGI LTSMFSAVFF SRGLVNLWYG
RQKKLKTVSI GTVWRPDASG AVAK