Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bpro_4645 |
Symbol | secD |
ID | 4012686 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas sp. JS666 |
Kingdom | Bacteria |
Replicon accession | NC_007948 |
Strand | - |
Start bp | 4927781 |
End bp | 4929655 |
Gene Length | 1875 bp |
Protein Length | 624 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637944294 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_551426 |
Protein GI | 91790474 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCGTT ATCCGGCCTG GAAGTACGCC ATTATTGTGG TCGCGCTATT GATCGCAGCC CTGTACACGC TGCCCAACTT TTTTGGCGAA GCGCCGGCAG TGCAGATTTC CAGCGGCAAG TCCACGGTCA AGATTGACAC GACGACGATG GCGAGGGTGG AACAGGCGCT CAAGGATGTG GGCATCACGG CGGATGTCAT CGCCCTGGAG GGTACTTCGG TCAAGGCACG CTTTGGCGAT ACCGATACCC AGCTCAAGGC GAAAGACGCC GTCCAGAAGG CGCTGTCGCC CGATCCCGCG AATCCGTCGT ATGTGGTCGC GCTCAACCTG CTGTCGCGCT CACCCGCCTG GCTGACTTCG CTGCACGCGT TTCCCATGTA CCTGGGGCTG GACCTGCGTG GCGGCGTGCA TTTCATGCTG CAGGTGGACA TGCAGGCGGC GCTGACCAAA CGGGCCGAGT CCCTGTCGGG CGACATTCGC CTGTCGCTGC GCGAAAAAAA TATCCGCCAT GGTGGCATCA GCCGCAATGC CCAGGCCATT GACATCAAGG TTCGCGACAG CGAGACCCTG GCCTCTGCCA AGGCGCTGAT CCAGGATCAG TTTCCGGACC TGCAGACCGT CGATGTCCCG GAGGGCACGG AGTACAAGCT GACGGCCAGC ATCAAGCCCG AGGCGGCGCG CCGGATCCAG GATCAGGCGC TCAAGCAGAA CATGGTCACG CTGCACAACC GGATCAACGA GCTGGGCGTG GCCGAGCCGG TGATTCAGCA GCAGGGCCTG GACCGTATCG TGGTGCAATT GCCGGGTGTT CAGGATACGG CCAAGGCCAA GGACATCCTG GGGCGTACAG CGACACTGGA GATGCGTCTC GTGGAAGACA GCGCCGAGGC GCGCGCTGCG GAAAACAACA CCGGTGCCGT GCCGTTTGGC ACCGAGCGCT TTTTCGAGCG CAACGGGCAG GCGGTGATTG TCAAGAAACA GGTGATCCTG ACCGGCGAGA ACCTGACGGA TGCCCAGCCC GGCTTTGACT CGCAGAACCA GCAGCCCAAA GTGGATCTGA CGGTCGATGC CAAGGGCGGC CGCATCATGC GCGACACCAG CCGCGAGAAC CTGAAGAAAC GCATGGCCAT CCTGCTGTTT GAAAAAGGCA AGGGCGAGGT CCTGACCGCG CCGGTCATCC AGAGTGAACT CGGCAACCGC TTCCAGATTT CCGGCTCCAT GAGTGTGAGC GAAGCCAATG ACCTGGCCTT GCTGCTGCGC GCGGGCTCCC TCGCCGCGCC CATGGAAATC ATTGAAGAGC GCACCATCGG CCCGACGCTG GGTGCCGACA ATATTTCCAA GGGCTTTCAC AGCGTGTCCT GGGGTTTTGT CGTGATCGTG GCCTTCATGG CGGCCTACTA CATGCTGTTC GGCCTGATCT CCGGCCTGGC GCTGGCGGTG AACCTGCTGC TGCTCGTCGC GGTGCTTTCC ATGCTGCAGG CGACCCTGAC CTTGCCCGGC ATGGCGGCCA TGGCACTGGC ACTGGGCATG GCCATCGACT CCAACGTGCT GATCAATGAG CGCGTGCGCG AGGAATTGCG CAATGGCGCC TCGGCCCAGG CGGCCATTCA TGCGGGGTAT GAGCGGGCCT GGGCCACCAT CCTGGACTCC AACACCTCGA CCCTGATTGT GGGCCTGGCA TTGCTGGCCT TTGGTTCCGG CCCGGTACGC GGTTTTGCGG TGGTGCACTG CATCGGCATT TTGACCAGCA TGTTCTCTGC GGTATTTTTC TCGCGTGGCC TGGTCAATCT CTGGTATGGC CGGCAGAAAA AGCTCAAGAC GGTGTCCATC GGCACGGTGT GGCGGCCCGA CGCGTCCGGC GCTGTGGCGA AATGA
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Protein sequence | MNRYPAWKYA IIVVALLIAA LYTLPNFFGE APAVQISSGK STVKIDTTTM ARVEQALKDV GITADVIALE GTSVKARFGD TDTQLKAKDA VQKALSPDPA NPSYVVALNL LSRSPAWLTS LHAFPMYLGL DLRGGVHFML QVDMQAALTK RAESLSGDIR LSLREKNIRH GGISRNAQAI DIKVRDSETL ASAKALIQDQ FPDLQTVDVP EGTEYKLTAS IKPEAARRIQ DQALKQNMVT LHNRINELGV AEPVIQQQGL DRIVVQLPGV QDTAKAKDIL GRTATLEMRL VEDSAEARAA ENNTGAVPFG TERFFERNGQ AVIVKKQVIL TGENLTDAQP GFDSQNQQPK VDLTVDAKGG RIMRDTSREN LKKRMAILLF EKGKGEVLTA PVIQSELGNR FQISGSMSVS EANDLALLLR AGSLAAPMEI IEERTIGPTL GADNISKGFH SVSWGFVVIV AFMAAYYMLF GLISGLALAV NLLLLVAVLS MLQATLTLPG MAAMALALGM AIDSNVLINE RVREELRNGA SAQAAIHAGY ERAWATILDS NTSTLIVGLA LLAFGSGPVR GFAVVHCIGI LTSMFSAVFF SRGLVNLWYG RQKKLKTVSI GTVWRPDASG AVAK
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