| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3536 |
|---|
| Symbol | |
|---|
| ID | 4013799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 3738356 |
|---|
| End bp | 3739180 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637943198 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_550342 |
|---|
| Protein GI | 91789390 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.446578 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACTC CAATGCCCGG CTCGTCTTCC GCCATTTCAT TCGGACTGGC CGACCGTGTC
TGTATTGTCA CCGGCGGCGC TCAGGGCATT GGCGAGGCCT GCATCCGGCG CTTTGCGCGC
GAACAGGCCA AGGTGGTCAT TGCCGATATC GACGACGCCC GGGGCGCTGC GCTGGCCCGC
GAAGTGGGCG GCCTGTATGT GCATTGCGAT GTGGGCGACA AGGCTCAGGT CGATGCACTG
GTGGCACAAA CCATCGCCGC GCACGGCCGC ATTGATGTGC TGGTAAACAA CGCCGGCATT
TTCAGGGCCG CCGATTTTCT GGAAATCACG GAAGCCGACT TCGACGCGGT GCTGCGCATC
AACCTCAAAG GCTCGTTTCT GGTGGGCCAG GCGGTGGCGC GCGAAATGGC CAGAGCCGAA
GCAAGACCAG GCATCGGCGG GTCCGCCTCG CGGGGCAGCA TCGTCAACAT GAGCTCCGTC
AACAGCGTGC TCACAATTCC CACGATTGCC AGCTACAACG TGAGCAAGGG CGGCATCAAC
CAGCTCACGC GCGTGATGGC GCTGGCGCTG GCGGACAAAG GCATACGCGT CAATGCGGTC
GCCCCTGGCA CCATCGCCAC CGACCTGGCC GCCAAGGCCG TGCTGACCAG TGAAGAGGCC
AAAGCCCGCA TCATGAGCCG CACGCCGATG AAGCGCCTGG GTGAACCCTC GGAAATTGCC
GACACAGTGG CCTATCTGGC CAGCGATGCG GCCAGCTACA TCACCGGCGA GATCGTGATG
GTCGACGGCG GGCGGATGAC GCTGAATTAC ACCGTGTCGG TCTGA
|
|---|
| Protein sequence | MNTPMPGSSS AISFGLADRV CIVTGGAQGI GEACIRRFAR EQAKVVIADI DDARGAALAR
EVGGLYVHCD VGDKAQVDAL VAQTIAAHGR IDVLVNNAGI FRAADFLEIT EADFDAVLRI
NLKGSFLVGQ AVAREMARAE ARPGIGGSAS RGSIVNMSSV NSVLTIPTIA SYNVSKGGIN
QLTRVMALAL ADKGIRVNAV APGTIATDLA AKAVLTSEEA KARIMSRTPM KRLGEPSEIA
DTVAYLASDA ASYITGEIVM VDGGRMTLNY TVSV
|
|---|
| |