Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bpro_3443 |
Symbol | |
ID | 4013901 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas sp. JS666 |
Kingdom | Bacteria |
Replicon accession | NC_007948 |
Strand | - |
Start bp | 3645162 |
End bp | 3646622 |
Gene Length | 1461 bp |
Protein Length | 486 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637943106 |
Product | RND efflux system, outer membrane lipoprotein, NodT |
Protein accession | YP_550250 |
Protein GI | 91789298 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.267273 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCCTA AACACACCCT TGCCATCTTC ATTGTTGCCG GCCTCTCGGC CGGCTGCGCC GTCGGTCCCG ACTATGTCAG GCCCGACACG CCCATGCCGC AACAGTACCT GGGCCAACCA GCGGTCGACC AGCGGCACGC CACTGCCCAT GCCGATCTCG TCACCTGGTG GACGGGTTTC GGTGATCCGC TACTGACTCG ATTCGTCACG CTGGCGGTGG AACAGAACCT CGATCTCGCG CAGGCATCCG CTCGCGTCAC CCAGGCGCGC GCGGAGCTTG GGGCGGCAAA TGCCGCGTTG CTGCCTTCCG GCAACGTCAG CGGCCAGGCA GCCAGAGCCT ACCAATCCCT TGAAACGCCT CTGGGAAAAG TCTTGAGCGC TAGCCCCGGT TTCGACCGTC ACGGCAGTTC TTACGAAACC AATCTCGGCG CGAGCTGGGA ACTGGATGTA TTCGGAGGCT TGCGTCGTGG AAAGGAAGCG GCACTTGCCG GGTACCAGGC GTCGGAGGCC GGCGCAGCCG CTACCCGGTT GGCTGTGGCG GCACAGACCG CCGACACCTA CATCATCATT CGTGGGCTGC AAACCCGCCT CGGCGTTGCC CGCGGGCAGG TGCAGACGCA GCAGGAATTG CTATCGACCA TCAACCTTCT GTATGGGAAG GGGTTGGCGG CCGAACTTCA AGTGAGGCAG GCCGAAGGTG CGCTTGCCCA GGTTCGGGCG TCCGTGCCGG TTCTTGAGGC GGGTCTGGAC GTGGCCATGA ACGCGCTTGA CGTGATGCTG GGCACGCCAC CCGGAACGCA TCGGATGGAA CTGGCCGATG CTGGCGTCAT CCCTGCTGCC CCGCAAATCA CTGCTGCAGG CTCTCCGGGT GAGCTGCTAA GGCGCCGCCC TGACCTGATT GTGGCTGAGC GCCGCCTTGC CGCATCGAAT GCCCGTATCG GTGTCGCCAT TGCCGAGTAC TACCCCAAAC TCTCTCTGAG TGGGCTGATC GGCAGCGCGA CATCGGTGTC CGGTGGCAAT CTGTTCACCA GCGGCGCGAG TCAGGCCGCC GGCGTGCTGG GTCTGCGCTG GCGTCTGTTC GACTTTGGCC GCATCAACGC GCAGATCGAC CAAGCCAGGG GCCAGGAGGC CGAGATGCTG GCTGCGTATC GGCTTGCCGT ACTGCGGGCA ACTGAGGACG TAGAAAACGC CTTTTCGGCC TTGGTCAAGC GCGAGGAGCA GGCTGTTGTA CTTGCCCAGG GAGTGGACTC TCTCGGCCGC GCCCGATCAG CTTCGTTTGC GGCGTATCAA AAAGGGGTAC TCAGTCTGAT CGAAGTCTTG CAGGCCGACG ACAACCTGCT ACGTGCCTCC GATGCGCGAG CGCAAGCGCA AACGGAATCA GCACGCGCGG CGGTCGCTAC CTTCAAAGCG CTCGGCGGCG GTTGGCAACC CCAGGAATCC AGCGCCGTGG CAATTAGATA G
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Protein sequence | MLPKHTLAIF IVAGLSAGCA VGPDYVRPDT PMPQQYLGQP AVDQRHATAH ADLVTWWTGF GDPLLTRFVT LAVEQNLDLA QASARVTQAR AELGAANAAL LPSGNVSGQA ARAYQSLETP LGKVLSASPG FDRHGSSYET NLGASWELDV FGGLRRGKEA ALAGYQASEA GAAATRLAVA AQTADTYIII RGLQTRLGVA RGQVQTQQEL LSTINLLYGK GLAAELQVRQ AEGALAQVRA SVPVLEAGLD VAMNALDVML GTPPGTHRME LADAGVIPAA PQITAAGSPG ELLRRRPDLI VAERRLAASN ARIGVAIAEY YPKLSLSGLI GSATSVSGGN LFTSGASQAA GVLGLRWRLF DFGRINAQID QARGQEAEML AAYRLAVLRA TEDVENAFSA LVKREEQAVV LAQGVDSLGR ARSASFAAYQ KGVLSLIEVL QADDNLLRAS DARAQAQTES ARAAVATFKA LGGGWQPQES SAVAIR
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