| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3260 |
|---|
| Symbol | |
|---|
| ID | 4014069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 3449758 |
|---|
| End bp | 3451881 |
|---|
| Gene Length | 2124 bp |
|---|
| Protein Length | 707 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637942928 |
|---|
| Product | polynucleotide phosphorylase/polyadenylase |
|---|
| Protein accession | YP_550072 |
|---|
| Protein GI | 91789120 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
|---|
| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATTT TTAATAAAGT TACCAAATCC TTCCAGTGGG GCCAGCACAA GGTCACGATG
GAAACCGGTG AAGTCGCGCG CCAGGCCAGC GGTGCCGTGG TTGTCGACAT GGACGGCACC
GTGGTGCTGG CCACCGTGGT TGCCAAGACC GATGCCAAGC CCGGCCAGGA CTTTTTCCCC
CTGACGGTCG ATTACCTCGA GAAAACCTAC GCAGCCGGCC GCATTCCTGG CAGCTTTTTC
AAGCGTGAAG GCCGCCCCAG CGAATTTGAA ACGCTGACGT CGCGCCTGAT CGACCGTCCG
ATTCGTCCGC TCTTCCCCGA AGGCTTCTTC AACGAAGTGC AGGTCGTGAT CCATGTGTTG
TCGCTGAACC CTGAAGTCGA GGGCGACATT CCCGCGCTGA TCGCATCGAG CGCCGCCCTG
TCGATTTCCG GCATTCCGTT CAACGGCCCG ATTGGCGCCG CCCGCGTGGC CTACGTCGAC
GGCCAGTATG TGTTGAATCC CGGCAAGACC CAGCTGAAAG ATTCGAAGAT GGATCTGGTC
GTGGCCGGCA CCGAAGCCGC CGTGCTGATG GTCGAGTCCG AAGCCCAGCA GCTGTCTGAA
GAAATCATGC TCGGCGCCGT GGTGTTTGGT CACGAACAGG CCAACATCGC CATCAACGCA
ATTCACGAAC TCGTGCGCGA CGCCGGCAAG CCGGTCTGGG ACTGGCAGGC GCCGGCGAAA
GACGAGCCGC TGATTGCAAA GGTCAACGAA CTGGCCGGCG CCAAGCTGCA GGCCGCTTAC
CAGATCCGCA GCAAGCAGGC GCGCACCCAG GCTTGCCGCG TGGCTTATGC CGACGTGATG
GCCGCCCTGA AGGCGGACGG CGTGGCATTT GACGGCGTGA CCGTTGAAGG CATGCTGTTC
GACATCGAAG CCAAAATCGT CCGCAGCCAG ATCCTGGCCG GCGAGCCACG CATTGACGGC
CGCGACACGC GAACCGTGCG TGCCATTGAA ATCCGCAACA GCGTGCTGCC CCGCACCCAC
GGCTCGGCCC TGTTCACGCG CGGCGAAACC CAGGCGCTGG TCGTCACCAC GCTGGGCACC
GAGCGCGACG CGCAGCGCAT CGACGCACTG TCGGGCGACT ACGAAGACCG CTTCATGCTG
CACTACAACA TGCCTCCGTT CGCCACCGGC GAAACCGGCC GTGTCGGCAG CCCGAAACGC
CGCGAGATCG GCCACGGCCG TCTGGCCAAG CGCGCCCTGA TTGCCGTGCT GCCCACAAAA
GAAGAATTCC CATACACCAT GCGCGTGGTG TCTGAAATCA CCGAATCCAA CGGCTCCTCG
TCGATGGCTT CGGTCTGCGG CGGCTGCCTG TCGCTGATGG ACGCCGGCGT TCCGATGAAA
GCGCACGTGG CTGGTATCGC CATGGGCCTG ATCAAGGAAG AAAACCGTTT CGCCGTGCTG
ACCGACATCC TGGGTGACGA AGATCATCTG GGCGACATGG ACTTCAAAGT GGCCGGTACC
ACCTTCGGTA TCACCGCGCT GCAGATGGAC ATCAAGATCC AGGGCATCAC GAAAGAGATC
ATGCAGGTTG CGCTGGCCCA GGCCAAGGAA GCCCGCATGC ACATCCTGGG CAAGATGCAG
GAAGCCATGG GTGAAGCCAA GGCCGAGGTG TCTGACTTCG CGCCGCGCCT CTACGTGATG
AAGATCAATC CCGAGAAGAT CCGTGACGTG ATCGGCAAGG GCGGCGCCGT CATCCGTGCG
CTGACCGAAG AAACCGGCAC GCAGATCAAC ATCGAGGAAG ATGGCACGAT CACCATCGCG
TCGAACGACA GCGCCAAGGC CGACGAGGCC AAGCGCCGCA TCGCCGAGAT CACCGCGGAA
GTCGAAATCG GCAAGGTCTA CGAAGGCGCC ATCACCAAGA TCCTGGACTT CGGTGCACTG
GTCAACCTGC TGCCCGGCAA GGACGGCCTG CTGCACATCA GCCAGATCGC CCACGAGCGT
GTCGAGAAGG TCACCGACTA CCTGAGCGAA GGCCAGATCG TCAAGGTCAA GGTTCTGGAG
ACCGATGAAA AAGGTCGCGT CAAGCTGTCG ATGAAGGCCT TGCTGGACCG TCCTGCCCAA
AATCAGGATC AGGACCGGGG TTAA
|
|---|
| Protein sequence | MSIFNKVTKS FQWGQHKVTM ETGEVARQAS GAVVVDMDGT VVLATVVAKT DAKPGQDFFP
LTVDYLEKTY AAGRIPGSFF KREGRPSEFE TLTSRLIDRP IRPLFPEGFF NEVQVVIHVL
SLNPEVEGDI PALIASSAAL SISGIPFNGP IGAARVAYVD GQYVLNPGKT QLKDSKMDLV
VAGTEAAVLM VESEAQQLSE EIMLGAVVFG HEQANIAINA IHELVRDAGK PVWDWQAPAK
DEPLIAKVNE LAGAKLQAAY QIRSKQARTQ ACRVAYADVM AALKADGVAF DGVTVEGMLF
DIEAKIVRSQ ILAGEPRIDG RDTRTVRAIE IRNSVLPRTH GSALFTRGET QALVVTTLGT
ERDAQRIDAL SGDYEDRFML HYNMPPFATG ETGRVGSPKR REIGHGRLAK RALIAVLPTK
EEFPYTMRVV SEITESNGSS SMASVCGGCL SLMDAGVPMK AHVAGIAMGL IKEENRFAVL
TDILGDEDHL GDMDFKVAGT TFGITALQMD IKIQGITKEI MQVALAQAKE ARMHILGKMQ
EAMGEAKAEV SDFAPRLYVM KINPEKIRDV IGKGGAVIRA LTEETGTQIN IEEDGTITIA
SNDSAKADEA KRRIAEITAE VEIGKVYEGA ITKILDFGAL VNLLPGKDGL LHISQIAHER
VEKVTDYLSE GQIVKVKVLE TDEKGRVKLS MKALLDRPAQ NQDQDRG
|
|---|
| |