| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3107 |
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| Symbol | |
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| ID | 4014226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 3279869 |
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| End bp | 3280861 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637942774 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_549919 |
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| Protein GI | 91788967 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00600257 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAACA GAACTCCCCG CATTTCGGCT ATTCGCTCGG CCGCCCTTGC CGCTTTGCTG
GCGGGCCTTG GCATGGGTGC TGCCCAGGCC ACCGAGTTCC GCTCGGCCGA CACGCACAAC
GCTGATGACT ACCCCACCGT CGCGGCCGTC AAGTACATGG GCGAGCTTCT CGAGAAAAAG
AGCGGCGGCA AACACAAGAT CAAGGTTTTC AACAAGCAGG CACTCGGCAG CGAGAAGGAA
ACCATCGACC AGGTGAAGAT TGGCGCGCTC GACTTCACGC GCGTCAATGT CGGCCCGATG
AACGCCATCT GTCCGCTGAC CCAGGTGCCG ACAATGCCCT TCCTGTTCAG CTCCATCGCG
CACATGCGCA AGTCGCTCGA CGGCCCGGTC GGTGACGAGA TCCTGAAGAG CTGCGAGTCT
GCCGGTTTCA TCGGCCTGGC TTTTTATGAC AGTGGTGCAC GCTCCATCTA CGCGAAGAAG
CCGATCAGGA CCGTCGCTGA TGCCAAGGGC CTGAAGATCC GTGTCCAGCA ATCCGACCTC
TGGGTCGCGC TGGTCAGCGC GATGGGCGCC AACGCCACCC CCATGCCTTA TGGCGAGGTC
TATACCGGCC TGAAGACCGG CCTGATTGAC GCCGCCGAGA ACAACATTCC GTCGTTCGAC
ACGGCCAAAC ACGTGGAAGC CGTGAAGGTC TACTCCAAGA CCGAGCATTC GATGGCGCCC
GAGATCCTGG TGATGTCCAA GATCATCTAT GACAAGCTGC CCAAGGCCGA GCAGGACATG
ATCCGCGCGG CGGCCAAGGA GTCGGTGGCA TTCGAGCGCC AGAAGTGGGA CGAGCAGGAA
GCGAAGTCAC TGGCCAATGT CAAGGCCGCT GGCGCCGAGA TCGTGGAAGT GGACAAGAAG
TCGTTCCAGG CCGTAATGGG CCCGGTCTAC GACAAGTTCA TGACCACGCC CGACATGAAG
CGCCTCGTTA AAGCGGTCCA GGACACCAAG TAA
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| Protein sequence | MTNRTPRISA IRSAALAALL AGLGMGAAQA TEFRSADTHN ADDYPTVAAV KYMGELLEKK
SGGKHKIKVF NKQALGSEKE TIDQVKIGAL DFTRVNVGPM NAICPLTQVP TMPFLFSSIA
HMRKSLDGPV GDEILKSCES AGFIGLAFYD SGARSIYAKK PIRTVADAKG LKIRVQQSDL
WVALVSAMGA NATPMPYGEV YTGLKTGLID AAENNIPSFD TAKHVEAVKV YSKTEHSMAP
EILVMSKIIY DKLPKAEQDM IRAAAKESVA FERQKWDEQE AKSLANVKAA GAEIVEVDKK
SFQAVMGPVY DKFMTTPDMK RLVKAVQDTK
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