| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3093 |
|---|
| Symbol | |
|---|
| ID | 4014251 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 3261002 |
|---|
| End bp | 3261781 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637942760 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_549905 |
|---|
| Protein GI | 91788953 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0482872 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.375383 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCG CAGGCAAAGT ATTTATCGTC ACCGGCGGCG CATCAGGTCT GGGTGAAGGC
ACGGCACGCA TGCTGGTCGC CAACGGCGCC AAGGTGGTGA TTGCCGACAT GCAGGCCGAC
AAGGGCGAAG CCATCGTCTC CGAGTTGACC AAAGAACTCG GGGAAGGCAA AGCCGCGTTT
GTGCCCTGCG ACGTCAGCCA GGAGGCCGAC GGCCAGGCCG TGGTGGCCAA GGCCGTGTCC
ATGGGCAAGC TGATGGGCCT GGTCAATTGC GCCGGCATTG CGCCCGCCGA AAAAACCGTA
GGCAAAAACG GCGCGCACGG CCTGGCCCTG TTCAGCAAGA CCATCACCGT CAACCTGATC
GGCAGCTTCA ACATGATCCG GCTGGCAGCC GACGCCATGT GCAAGAACGA GCCGGAAGCC
ACCGGCGAGC GCGGTGTGCT GATTTCCACC GCCTCGGTCG CGGCCTATGA CGGGCAGATC
GGCCAGGCCG CCTACAGCGC GTCCAAGGGC GGCATCGTCG GCATGACCCT GCCCATTGCC
CGCGACCTGG CACGCAACGG CATCCGAAAC ATGACCATCG CCCCCGGCAT CTTCGGCACG
CCCATGCTGT TTAGCATGCC GCAGGAAGTG CAGGACTCGC TGGCCGCCGG CGTGCCCTTC
CCTTCGCGCC TGGGTACGCC GCAAGACTAT GCCAAGCTGG CCAAACACAT CATCGAAAAC
GACATGCTCA ATGGCGAGGT GATCCGCCTC GACGGCGCGA TTCGGCTGGC GCCACGCTGA
|
|---|
| Protein sequence | MDIAGKVFIV TGGASGLGEG TARMLVANGA KVVIADMQAD KGEAIVSELT KELGEGKAAF
VPCDVSQEAD GQAVVAKAVS MGKLMGLVNC AGIAPAEKTV GKNGAHGLAL FSKTITVNLI
GSFNMIRLAA DAMCKNEPEA TGERGVLIST ASVAAYDGQI GQAAYSASKG GIVGMTLPIA
RDLARNGIRN MTIAPGIFGT PMLFSMPQEV QDSLAAGVPF PSRLGTPQDY AKLAKHIIEN
DMLNGEVIRL DGAIRLAPR
|
|---|
| |