| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2613 |
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| Symbol | |
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| ID | 4014723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 2743464 |
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| End bp | 2745098 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637942275 |
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| Product | ribosomal large subunit pseudouridine synthase B |
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| Protein accession | YP_549427 |
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| Protein GI | 91788475 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0609714 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCAAC CAGACCACCC GGCTTCCGAC CTCCCGCCCA CTCAGCCGGG CGAAGATGAA
AATAAACCTG CTGCGACAGA AAAATCCGGG CAGGACGCCC CTGATTTAAT AGCTGATAAG
CCCCAAGAAA AGGCCGTGGC GTTAGCGCAG CCCGCCGGAC AGCCGGTGGC GCAGCCTGCG
ACCAGCACTA TCCGTTTCGA GGACGTGGTG ACCGGGCAGT TTGACGCTGA TGAAGACGAT
GTGGCGCTCG AGTTGCCCAA GCGGGTGCTG TCGCCTCAGC CGGAAACCCC CAAGCTGCAC
AAGGTGCTGG CGCAAGCCGG GTTGGGCTCC CGCCTGGAGA TGGAGCAGCT TATTCTCGAG
GGACGCATTT CGGTCAATGC CGAGCCGGCT CACATCGGGC AGCGCATCCA GTTCGGCGAC
ACCGTCAAGG TCAACGGTAA GCCCATTCGC GTGCGAATTG ATCCGCCGCC GCCTCGCGTG
ATTGCGTATC ACAAGCCCAG CGGAGAGGTT GTGACGCACG ACGATCCGCA AAACCGGCCC
ACGGTGTTCC GGCGCTTGCC CAAATTGTTT CAGGGTAAAT GGCAGTCCGT CGGGCGTCTT
GACCTGAACA CCGAAGGCTT GCTCTTGTTG ACGAGTTCGG GCGAGCTGGC CAACAAGCTG
ATGCATCCGC GCTTTGGCCT AGAGCGCGAG TATGCGGTGC GGGTGTTGGG TGCGCTGAGC
AACGAGGAGA AAAAGCGCCT GCTGGAAGGC GTGACCCTGG ATGATGGCGT GGCGCAGTTC
AGCTCCATCG AGGCCGGTGG CGGCGAGGGT GCCAATTGCT GGTACCGGGT CACCATATCC
GAGGGGCGCA ATCGTGAGGT TCGCCGCATG TTCGAGGCGG TGGGCCACGC GGTCAGCCGT
CTCATTCGGA TCCGCTACGG CGCCATGCTG TTGCCGCGCG GACTGAAGCG GGGCGCATTC
GTCGAACTGG ATGAACGGGA TATCTGGGCG CTGACCAATG CGGTCACCCG CTCCGAGTCC
CGGGCGGATC CGCGGGGCGC GCCCAAACAC CCGGGTCATG TTCGCGGCGA CGAAGGTGGC
GAATTCCGCC CAGGCCGCGG CCCTCGCCGA AATGAGCGCT CGCGCGGTGA CCGCGGGCGC
CTGCCGGCCC CCGAGAGCGG GCAAGCCGAT GACTTTCAGC CCGCCGATGC CGATGCCGAG
CAGGAGCCCA ATGAGCTGCA GCCGCCAATG CACCGGACGG ACTCTGCGCC CAGGGGCAAC
AGGCGCCGCG GGGGGAAAGG TCGTGGGCAG GGGGGTAACC CCGGTTCACC CCCTCGCTTT
GGACAGGCTG CGGGAAATGG TCCGCAGGGA CCAAAGCGGC GCGATGACCG TGGGGACCGG
GGTGACAAAA GCGCCGGGGG GGCCCAGCAG CCCGATCCGA TGAAGACATC CTTTGGTTAT
ATCGGTGCGG ATACCTTCAC CCGGCAGCGG CAAGGTCAAG GTCAAGGTCA AGGTCAGGGG
CAACGCCGCA GTGGCGGCGG GGGATCTGGC ATGGGCGGTG CCGGTGGGGG GCAGCGCCGT
GGCGGCGGGG GTGGTGGCGG AAACCGCGGA GGCGGCAATC GTGGTGGTGG CGGTAATCGC
GGCGGAAATC GTTGA
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| Protein sequence | MNQPDHPASD LPPTQPGEDE NKPAATEKSG QDAPDLIADK PQEKAVALAQ PAGQPVAQPA
TSTIRFEDVV TGQFDADEDD VALELPKRVL SPQPETPKLH KVLAQAGLGS RLEMEQLILE
GRISVNAEPA HIGQRIQFGD TVKVNGKPIR VRIDPPPPRV IAYHKPSGEV VTHDDPQNRP
TVFRRLPKLF QGKWQSVGRL DLNTEGLLLL TSSGELANKL MHPRFGLERE YAVRVLGALS
NEEKKRLLEG VTLDDGVAQF SSIEAGGGEG ANCWYRVTIS EGRNREVRRM FEAVGHAVSR
LIRIRYGAML LPRGLKRGAF VELDERDIWA LTNAVTRSES RADPRGAPKH PGHVRGDEGG
EFRPGRGPRR NERSRGDRGR LPAPESGQAD DFQPADADAE QEPNELQPPM HRTDSAPRGN
RRRGGKGRGQ GGNPGSPPRF GQAAGNGPQG PKRRDDRGDR GDKSAGGAQQ PDPMKTSFGY
IGADTFTRQR QGQGQGQGQG QRRSGGGGSG MGGAGGGQRR GGGGGGGNRG GGNRGGGGNR
GGNR
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