| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2592 |
|---|
| Symbol | |
|---|
| ID | 4014741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 2717310 |
|---|
| End bp | 2719430 |
|---|
| Gene Length | 2121 bp |
|---|
| Protein Length | 706 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637942254 |
|---|
| Product | DNA ligase, NAD-dependent |
|---|
| Protein accession | YP_549406 |
|---|
| Protein GI | 91788454 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.457213 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACCA AAGACCTGTT TGCGCAGCCG GAGCCTTCGC GGCAGCCGGC GTCCCCTGCT
GAACGCATGG CCGCCTTGCG CGCTGAACTT CACGCTCATG CTCATCGCTA TTACGTCCTG
GACGAGCCGA CCATTCCCGA CAGCGAGTAC GACAGGCTGT TCAAGGAGTT GCAGGACCTG
GAAGCGGCAT ACCCGGAGTT GCTGACACCG GATTCCCCGA CGCAGCGCGT GGGCGGCAAG
CCGCTTGACC AGTTTGCCAG CGTGCGCCAC AAGGTGCCCA TGCTCAGCAT TCGCACGGAG
ACGGACACAG AGGCCACCGG CGCGCAAAAT TTCGACACCC GCGTGCGCAA GGAACTGGGG
CTGACGGAGT CGAATCCGCC GGTCGAGTAT GTGGCTGAAC TGAAGTTTGA CGGGCTGGCC
ATGAGCTTGC GTTATGAGCA CGGTGTGCTG GTGCAGGCGG CCACCCGCGG CGACGGCGAG
GTCGGGGAAG AGGTGACGCA GAACATCCGT ACCATCAGGC AAATTCCTCT CAAACTGCCA
TCAGATGCAC CACCTGTGCT GGAAGTGCGG GGTGAGGTTT ATATGCGGCG CGCTGATTTC
GAAGCCTTGA ACGACAAACA GCGAGAAAAA ATCGCGGCGG GCGCCAAAGG TGAAAAAACC
TTTGTGAATC CGCGCAACGC CGCCGCTGGT GCGGTGCGCC AGCTGGATCC CGCTATCGCC
GCGCAGCGCC CGTTGAGCTT TTTTGCCTAT GGCGTGGGCG AGGTGGTGCT GGAGGCCGAA
CAAGCCAACC CGAAGAACCC TTGGGTTGCG ACCCATATGG AGCTTCTGCA AGCGCTGAAG
TCATGGGGGT TTCCAGTGGC AGCCCAGACA AAAATTGCGC ATGGTGCTTC TGAATTGATA
GCGTTTCACC AGGCCATGGG CCAGCAGCGC GACAGCCTGC CTTACGACAT TGATGGGGTG
GTGTACAAGG TCAACAGCCT GGCATTGCAG AAACAGATGG GGTTTGTCAG CCGGGAACCA
CGCTGGGCTG TGGCCCATAA ATACCCGGCG CAGGAACAGC TCACCACCGT GCTGGGCATT
GAGGTGCAGG TCGGGCGCAC GGGTAAGTTG ACGCCGGTGG CCAAGCTGGC ACCGGTCTTT
GTGGGTGGCG TTACCGTGAC CAATGCCACG CTGCACAACG AGGACGAAGC GCGCCGCAAG
GATGTGCGGG TGGGCGACAC CGTGATTGTT CGCCGTGCCG GCGACGTGAT CCCCGAGGTT
GTCAGCGTGC TGCCCGACAA GCGATTGCCG GGCGCGCCGA TGTTCACGAT GCCGCGCCAA
TGTCCGGTCT GCGGCTCCGA TGCGGTGCGC GAGGAGGGCG AAGCCGATTA CCGGTGCACC
GGCGGGCTTT TTTGCGGCGC ACAGCGCAAG GAAGCCATCC TGCACTATGC GCACCGACGC
GCCGTCGAGA TTGAGGGCCT GGGTGACAAG CTGGTGGAGC AATTGGTGGA CGCCAATGTG
ATTCGCACAT TACCCGACCT TTACAAGCTG GGCCTGACGG CTTTGGCCAG CCTGGACCGC
ATGGCCGAAA AATCGGCCAA TAACCTGCTC AAGGCGCTGG AAAAATCCAA GCAGACCACC
TTGCCGCGCT TTCTGTTCGG CCTGGGTATC CGCCACGTGG GTGAAGCCAC AGCCAAGGAA
CTGGCGCGTC ATTTTGGCAA TCTGGACGCC ATCATGGATG CCACGCAAGA GCAGTTGCTG
GCTGTCAGCG ACGTCGGCTC CATCGTTGCC CAGAGCATAC GTACCTTCTT TGACCAGCCC
CACAACCGTG AGGTGGTCGA GCAGCTGCGC GCCTGTGGCG TTCACTGGGA GGAGGGAGAA
CCTGCTGCCG TTGCCCCCAA ACCGCTGTCC GGGAAGACCT TTGTGATCAC CGGCACCTTG
CCCACGCTGA GCCGGGATGA GGCCAAGGAC AAGGTGGAGG CCGCCGGTGG CAAGGTAGCT
GGCTCGGTCA GCAAAAAGAC GGATTATGTG GTGGCAGGTA CCGAGGCTGG CAGCAAGCTG
GTCAAGGCGC AGGAGCTTGG TATCGCCGTG ATCGATGAAG CGGCCTTGAT GCGCCTGCTG
GCTTCTGCTG AAGCTGAATA A
|
|---|
| Protein sequence | MATKDLFAQP EPSRQPASPA ERMAALRAEL HAHAHRYYVL DEPTIPDSEY DRLFKELQDL
EAAYPELLTP DSPTQRVGGK PLDQFASVRH KVPMLSIRTE TDTEATGAQN FDTRVRKELG
LTESNPPVEY VAELKFDGLA MSLRYEHGVL VQAATRGDGE VGEEVTQNIR TIRQIPLKLP
SDAPPVLEVR GEVYMRRADF EALNDKQREK IAAGAKGEKT FVNPRNAAAG AVRQLDPAIA
AQRPLSFFAY GVGEVVLEAE QANPKNPWVA THMELLQALK SWGFPVAAQT KIAHGASELI
AFHQAMGQQR DSLPYDIDGV VYKVNSLALQ KQMGFVSREP RWAVAHKYPA QEQLTTVLGI
EVQVGRTGKL TPVAKLAPVF VGGVTVTNAT LHNEDEARRK DVRVGDTVIV RRAGDVIPEV
VSVLPDKRLP GAPMFTMPRQ CPVCGSDAVR EEGEADYRCT GGLFCGAQRK EAILHYAHRR
AVEIEGLGDK LVEQLVDANV IRTLPDLYKL GLTALASLDR MAEKSANNLL KALEKSKQTT
LPRFLFGLGI RHVGEATAKE LARHFGNLDA IMDATQEQLL AVSDVGSIVA QSIRTFFDQP
HNREVVEQLR ACGVHWEEGE PAAVAPKPLS GKTFVITGTL PTLSRDEAKD KVEAAGGKVA
GSVSKKTDYV VAGTEAGSKL VKAQELGIAV IDEAALMRLL ASAEAE
|
|---|
| |