| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2097 |
|---|
| Symbol | |
|---|
| ID | 4015245 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 2185479 |
|---|
| End bp | 2186420 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637941766 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_548922 |
|---|
| Protein GI | 91787970 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.036296 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0908673 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCC CCTCCTGGCT CCAGTTCAAC CCCGGGCGGC GCTTTGTCAT CGGCGTGCCC
TACGTCTGGC TGCTGCTGTT TTTTGTGCTG CCTTTCCTGA TCATGCTGCG CATCAGCGTG
ACGGACATGG GCAATGGCGT GGATCCTTTT GCGCCGCTGG TGGAGGCCGT GTCGGGCTCC
TGGCGTGTCA TGCTGCGTTA TGCAAATTAC GTTTCCATCT TTCACGACGC AGGGCAGGGG
GCCGATAGCG GATGGGGTAA CACCATCTAC ATGGAGGGCT ACGAGACCTC CCTGAAATAC
GCCTTGTTCA CCACAGTGTC GTGCCTGGTG ATTGGCTATC CGTTTGCCTA TTTCATTGCC
CGGTCGCGGC CCTCCATTCG CCCGGCCTTG CTGATGCTGG TCATGCTGCC TTTCTGGACC
TCGTTCCTGC TGCGCGTCTA TGCGTGGAAG GGGATCCTGG CCGACCAGGG CGTGCTCAAC
AACCTGCTGC TGGCGCTGGG CATCATCGAT GAACCCATGG TGATGCTCTA CACCAATGTG
TCCATGCTGG TCGGCATGAC CTATGTGTAT TGCCCCTTCA TGATCCTGCC GCTCTATGCC
AACCTGGTGA AGATGGATTT CCGCCTGCTG GAAGCGGCCC ATGACCTGGG GGCCAGCGCC
TGGAAGGCGT TCTGGCTGAT CACCGTGCCG TTGAGCAAAT CCGGCATCAT TGCCGGCTCC
ATGCTGGTCT TCATTCCCAG TGTGGGTGAG TTCGTCATTC CCTCGCTGCT GGGCGGCGCC
GAAAACATCA TGATCGGCCG CGTGGTCTGG GACGAAATGT TCAGCAGCAA CAACTGGCCG
CGCGCGGCGG CCCTGGCCGT CGTGATGATT CTGCTCATCC TGGTGCCTTT GGCCTTTTAC
TACCGTGCAA GCGCCGCGCG CGATGCTCAC GGAGAATCGT GA
|
|---|
| Protein sequence | MKIPSWLQFN PGRRFVIGVP YVWLLLFFVL PFLIMLRISV TDMGNGVDPF APLVEAVSGS
WRVMLRYANY VSIFHDAGQG ADSGWGNTIY MEGYETSLKY ALFTTVSCLV IGYPFAYFIA
RSRPSIRPAL LMLVMLPFWT SFLLRVYAWK GILADQGVLN NLLLALGIID EPMVMLYTNV
SMLVGMTYVY CPFMILPLYA NLVKMDFRLL EAAHDLGASA WKAFWLITVP LSKSGIIAGS
MLVFIPSVGE FVIPSLLGGA ENIMIGRVVW DEMFSSNNWP RAAALAVVMI LLILVPLAFY
YRASAARDAH GES
|
|---|
| |