| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1997 |
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| Symbol | |
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| ID | 4015366 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 2064722 |
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| End bp | 2065939 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637941665 |
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| Product | succinyldiaminopimelate transaminase |
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| Protein accession | YP_548825 |
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| Protein GI | 91787873 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
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| TIGRFAM ID | [TIGR03538] succinyldiaminopimelate transaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.356902 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCCC TGCTTTCCCG CCTCCAGCCC TATCCTTTTG AGCGTCTGCG CCAATTGCAC
GCCGGCGTCA CCCCCAACCC CGCCTACCGG CCCATCAGCC TGGGTATCGG CGAGCCCCGG
CATGCGACGC CGCAACTCGT CAAGGATGCA CTGACGGCCA GCCTGAGTGG CCTGGCGAGC
TACCCCGGTA CGCTGGGCGA GCCCAAATTG CGCCAGGCCA TGAGCGACTG GCTGGCCCGC
CGCTATGGCC TGTCGATTGA CCCGGCCACG CAAATCCTGC CCGTGAACGG CTCGCGGGAA
GCGCTTTTTT CACTGGCGCA GACGGTGCTG GACGCCAGCA AGCCGGGCGC CACCGTGGTC
TGTCCCAATC CTTTTTACCA AATCTACGAA GGCGCCGCGC TGCTGGGCGG CGCGCAGACC
TGGTTTGCGC CCAGCGACCC GGCACGGAAT TTTGCGGTGG ACTGGGCGGG CGTGCCGGAG
ACCGTATGGG CCAAGACCCA GCTGGTGTTT GTCTGCTCGC CCGGCAACCC TACCGGCGCG
GTGATGTCGC TGGCGGAGTG GGAACTGCTG TTCAAGCTGA GCGACCGGTA CGGCTTTGTG
ATCGCCTCGG ACGAGTGCTA CAGCGAAATC TACTTCCGCG AAGGTGACGC TGGAGGGGCG
CCGCTGGGCG GGCTGCAGGC CGCGGCGCAA TTGGGCCGGC ATGACTTCAA AAACCTGATT
TCGCTGACCA GCCTGTCCAA GCGCAGCAAT GTGCCGGGCC TGCGCAGCGG CTTTGTGGCG
GGCGACGCGG CGCTGATCAA GCCTTTTTTG CTCTACCGCA CCTACCACGG CAGTGCCATG
AGCCCGGTGG TGCAGGCCGC CAGCATTGCG GCCTGGAACG ACGAGCAGCA TGTGGTGGAA
AACCGGGCCC TGTACCGCGA AAAATTTGCC CGGGTCACGC CCCTGCTGGC CTCTGTGATG
GAAGTGGCCC TGCCTGATGC CGGTTTTTAC CTGTGGGCCG GCATACCTGA CATATTCAGG
GGTTCCGACA CCGAATTCTC GCGCGAGCTG CTCGCTCTTT ACAATGTCGT GGTGTTGCCG
GGCAGTTACC TGGCGCGCGA TGCCCAAGGC CATAACCCCG GCGCCGGCAG AATCCGCATG
GCACTGGTGG CGGAAACTGC CGAATGCGTG GAAGCCGCGG AGCGCATCGT TCAGTTCATT
CAATCCAAAG CTCGCTGA
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| Protein sequence | MNPLLSRLQP YPFERLRQLH AGVTPNPAYR PISLGIGEPR HATPQLVKDA LTASLSGLAS
YPGTLGEPKL RQAMSDWLAR RYGLSIDPAT QILPVNGSRE ALFSLAQTVL DASKPGATVV
CPNPFYQIYE GAALLGGAQT WFAPSDPARN FAVDWAGVPE TVWAKTQLVF VCSPGNPTGA
VMSLAEWELL FKLSDRYGFV IASDECYSEI YFREGDAGGA PLGGLQAAAQ LGRHDFKNLI
SLTSLSKRSN VPGLRSGFVA GDAALIKPFL LYRTYHGSAM SPVVQAASIA AWNDEQHVVE
NRALYREKFA RVTPLLASVM EVALPDAGFY LWAGIPDIFR GSDTEFSREL LALYNVVVLP
GSYLARDAQG HNPGAGRIRM ALVAETAECV EAAERIVQFI QSKAR
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