Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bpro_1944 |
Symbol | |
ID | 4015425 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas sp. JS666 |
Kingdom | Bacteria |
Replicon accession | NC_007948 |
Strand | + |
Start bp | 2004590 |
End bp | 2007694 |
Gene Length | 3105 bp |
Protein Length | 1034 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637941611 |
Product | HsdR family type I site-specific deoxyribonuclease |
Protein accession | YP_548773 |
Protein GI | 91787821 |
COG category | [V] Defense mechanisms |
COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.31477 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGAAG ACCAACTTGA ACAGGAAACC TTAGCCTGGC TGGCCGATGT GGGATACACC CATCGCTATG GTCCCGACAT CGCCCATGAT GGTGCTATGC CCGAGCGCAG CAGCTACCGC CAGGTGTTGC TGCCGTTTCG CCTGCGCGAG GCCATCCAGA AGCTCAATCC CGGGATCCCT ACTGCCGCCC GTGAAGATGC CCTCAAGCAG GTGCTTGATC TTGGCATACC CGCATTGCTG ACGGCCAACC AGCACTTCCA CCGGCTGCTG GTGGCCGGTG TGCCGGTGCG GTACCAGAAG GACGGTGAAA CTCGGGGCGA CTTTGTGCGC CTGATTGACT GGGCTGATCC TGAGCGCAAC GAGTGGCTGG CGGTTAACCA GTTCAGCATC AAGGGCCCTC ACCACACACG CCGGCCCGAC ATTGTCTTGT TCGTCAACGG CCTGCCGCTG GTGCTGCTAG AACTGAAGAA CCCGGCGGAT AAAAACGCCG ACATCTGGCG AGCTTACGAC CAGATTCAGA CGTACAAAGA GCAGATTCCC GACGTATTTC AGACTAATGA GGTGCTGGTC ATCACCGACG GTACCGAGGC GTTGATGGGG TCGTTGTCGG CCGATGCCGA GCGTTTCATG GCCTGGCGCA CCATCGACGG CGTGACGCTG GATCCCTTGG GCGAGTTCAA CGAACTGCAA ACCCTGGTGC GCGGCGTGCT GGCGCCGGCC TATTTCCTGG ACTTCCTCCG TTACTTTGTG CTGTTCGAGG ACGATGGCGC CCTGGTCAAA AAGATCGCCG GTTACCACCA GTTCCACGCT GTGCGTGCTG CCATTCTCCA GGTGGTGGAC GCATCGCGTC CGGGAGGCTC CCAAAAAGGC GGTGTGGTCT GGCACACCCA GGGTAGCGGC AAGAGCATCA CCATGACCTG CTTTGCCGCC CGCGTCATGC AGGAACCGGC GATGGAGAAC CCCACCATCG TCGTCATCAC CGACCGCAAC GACCTGGACG GGCAGTTGTT TGGCGTGTTC AGCCTGGCAC AAGACCTGTT GCGCGAGCAG CCGGTGCAGG TGAGTACCCG TCAGGATCTA CGCGCCAAAT TGGCCAACCG ACCTTCTGGC GGCATCGTAT TTGCAACTAT CCAGAAATTC ATGCCTGGCG AGGACGAGGA CACGTTCCCA ATGCTGTCCG ACAGGCACAA CATCGTCGTG ATCGCCGATG AGGCTCACCG CACACAATAT GGCTTTGAGG CTAAGCTCAA AGGCAAACAA GGGCAGGAAA GTTACCAGGG CGGCTATGCC CAGCACTTGC GCGATGCGTT GCCTAACGCG ACCTTTGTTG CATTTACCGG CACTCCCGTC AGCAGCACCG ACCGCGACAC CCGGGCCGTG TTCGGCGACT ACATCCATAT CTACGACATG CAACAGGCCA AGGACGATGG CGCCACCGTG GCCATCTACT ACGAGTCGCG CCTGGCCAAA CTCAGCCTGA TTGAGTCCGA CCTGTCGCAG ATGGACGAGG AGGTCGACGA ACTGGCCGAG GACGACGAGG AAAGCCAGCA GGCCGTCCTC AAAAGCCGCT GGGCCGCTCT CGAGAAGGTT GTTGGCGCGG AACCGCGCGT GGCCAGCGTG GCAGCCGATT TGGTAACTCA CTTCGAGGAA CGCAACAAGG CACAGCCCGG CAAGGCGATG GTTGTGGCCA TGAGCCGCGA CATCTGCGTC CACCTGTACA ACGAGATCGT AAAGCTGCGC CCGGACTGGC ACGATGCTGA CCCGGAGAAG GGCGCCGTCA AGATCGTCAT GACCGGCTCG GCAAGTGACA AACCACTGCT GCGTCCGCAC ATTTACAGCG CCCAGACCAA GAAGCGGCTG GAAAAGCGCT TCAAGGACCC GGCCGATCCG CTGCGCCTCG TGATCGTGCG TGACATGTGG CTGACTGGCT TTGACGCCCC TTGCGTGCAT ACCCTGTACG TGGACAAGCC CATGAAGGGC CATAACCTGA TGCAGGCCAT AGCCCGCGTG AATCGTGTGT TCAAGGACAA GCAAGGCGGC CTGGTGGTGG ACTATATCGG CATCGGCAAC GAGCTGAAGT CGGCCATGAA GGAATACACC CAATCAAAGG GCCGTGGCCG TCCCACGGTG GACGCGCATG AGGCGTATAG CGTGCTCGCG GAAAAGCTTG ATGTGCTGCG CTCCATGCTG CACGGCTTTG ATTACACCGG ATTCTTGACT GGCGGACACA AAACCCTGGC CGGTGCCGCC AACCATGTGC TGGGCCTCAA CACCGGCTCG TCCCGGGACG GCAAGAAGCG ATTTGCCGAC ACTGCGCTGG CCATGAGCCA GGCGTTTACG CTGTGCTGCA CGCTTGACGA AGCCAAGGCA GTGCGCGAGG AAGTGGCCTT TATGCAGGGC GTGAAGGTCA TCTTGACGAA GAAGGAGCTG ACGGCCAAGA GGCGCACGGA TGAGGCGCGC GAACTGGCTA TCCGGCAGAT CATCAGCTCG GCGGTGGTGT CCGAGAGTGT GGTGGACATC TTTGACGCCG TGGGCCTGGA CAAGCCCAAC ATCGGCCTGC TGGATGACGA ATTCCTTGCC CAGGTCAAAA ACCTGCCGGA AAAGAACCTG GCTGTGGAGC TGCTGGAGCG GCTGCTGGAG GGGGAAATCA AAAGTCGCTT CACAAGCAAT GTCGTACAGG ACAAGAAGTT CTCGGAGATG CTGGCCAACG TCATCACTCG CTATCAAAAC CGCTCGATTG AAACAGCGCA GGTCATGGAA GAGCTGGTGG AAATGGCCAA GAAATTCCGT GAAGCGGCAT CCCGCGGAGA GTCGCTGGGG CTGACCGAGG ACGAGGTGCG CTTTTACGAT GCGCTGGCTA ACAACGAGTC AGCGGTACGC GAGCTGACCG ACGAAACCCT CAAGAAGATC GCCCACGAGC TGACCGAGAA CCTGCGTCAG AACCTGAGCG TGGACTGGTC AGAACGCGAG AGCGTGCGAG CCAAATTGCG CTTGATGGTC AAGCGCATTC TGCGCAAATA CAAATACCCA CCGGATCTGC AGGACGCTGC TGTGGAGCTG GTGCTGAAGC AGGCGCAGGT GATGGGGGAG AGTTGGTCGG TGTGA
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Protein sequence | MTEDQLEQET LAWLADVGYT HRYGPDIAHD GAMPERSSYR QVLLPFRLRE AIQKLNPGIP TAAREDALKQ VLDLGIPALL TANQHFHRLL VAGVPVRYQK DGETRGDFVR LIDWADPERN EWLAVNQFSI KGPHHTRRPD IVLFVNGLPL VLLELKNPAD KNADIWRAYD QIQTYKEQIP DVFQTNEVLV ITDGTEALMG SLSADAERFM AWRTIDGVTL DPLGEFNELQ TLVRGVLAPA YFLDFLRYFV LFEDDGALVK KIAGYHQFHA VRAAILQVVD ASRPGGSQKG GVVWHTQGSG KSITMTCFAA RVMQEPAMEN PTIVVITDRN DLDGQLFGVF SLAQDLLREQ PVQVSTRQDL RAKLANRPSG GIVFATIQKF MPGEDEDTFP MLSDRHNIVV IADEAHRTQY GFEAKLKGKQ GQESYQGGYA QHLRDALPNA TFVAFTGTPV SSTDRDTRAV FGDYIHIYDM QQAKDDGATV AIYYESRLAK LSLIESDLSQ MDEEVDELAE DDEESQQAVL KSRWAALEKV VGAEPRVASV AADLVTHFEE RNKAQPGKAM VVAMSRDICV HLYNEIVKLR PDWHDADPEK GAVKIVMTGS ASDKPLLRPH IYSAQTKKRL EKRFKDPADP LRLVIVRDMW LTGFDAPCVH TLYVDKPMKG HNLMQAIARV NRVFKDKQGG LVVDYIGIGN ELKSAMKEYT QSKGRGRPTV DAHEAYSVLA EKLDVLRSML HGFDYTGFLT GGHKTLAGAA NHVLGLNTGS SRDGKKRFAD TALAMSQAFT LCCTLDEAKA VREEVAFMQG VKVILTKKEL TAKRRTDEAR ELAIRQIISS AVVSESVVDI FDAVGLDKPN IGLLDDEFLA QVKNLPEKNL AVELLERLLE GEIKSRFTSN VVQDKKFSEM LANVITRYQN RSIETAQVME ELVEMAKKFR EAASRGESLG LTEDEVRFYD ALANNESAVR ELTDETLKKI AHELTENLRQ NLSVDWSERE SVRAKLRLMV KRILRKYKYP PDLQDAAVEL VLKQAQVMGE SWSV
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