| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1890 |
|---|
| Symbol | |
|---|
| ID | 4015449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 1953794 |
|---|
| End bp | 1955317 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637941559 |
|---|
| Product | polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_548721 |
|---|
| Protein GI | 91787769 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.673288 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.907682 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGG GCGGACTCGG CCGGCCCGGT GTGGCTGCGG TGAAATGGAG TGCCGTCTCC
ACCGGTGCCC GCTTTGCGCT GCAACTGGTG GCGCAGGTGG TGCTCGCCCG TACGCTGGGC
CCGGATATCT TCGGCGTGTT CGCCATCGGC ATGGTGGTGC TGACCTTTGC GACCTTTTTT
TCCGGCTTCG GCTTCAGCTG GAGCCTGCTG CAGCGGGAAA CATTGAGCGA GGAGGACATC
CGCTTTGCAT GGACCTGGCA GTTGATCGTG GGCGCGCTGA CGACGCTCGC CGTGTATTTT
CTGGCTCCCC TGCTGGCCGT CTATTTCAGG GAACCACGCG CACAAGCCGT CGTTGAATGG
CTCTCGCTGG CCTGCCTGCT CGCCGCAGCG GCTGCGCCGT CAAGCTACCT GCTGCAGCGC
GACCTCAACT TCAAGGCCGT CGGACTGATT CAGGTGGGCA GCTACGCCGC GGGCTATGTG
GCGGTAGGTG TGCCCATGGC CTTGCTGGGG TGGGGCGCCG CCTCGCTGGT GGCCGCGTGG
CTGGTGCAGT CCGGCGTGCT GCTGGTGGCC AGCTATGCAC TGAAACCGCA TGCCGTGCGC
CCGCTTTTCT GGTACCCCGA TGCGGCGGCC GCTGTGGGCA CCGGCCGCGC CGTGTTTGCC
ACCAACATCG TCAACTGGCT GCTCAACAAT CTTGACCGGG TACTGATAGG GCGCCTGCTC
AATGCCCAGG CACTGGGTCT TTACAACGTG GCTTACAACC TGGCCACCAT GCCGAACACC
CTGCTGCTCG GCGCACTGCA GCCCGCATTC CTGGCGGCTG GTGCACGGTT GCAGGGCGAC
CTGCAAAGGC TTGGCCGGGC CTATCTTCAG ATGCTGGCCA CCGTTTTCGT TTTGGGTCTT
CCAGCCTTTG TATTTCTCGC GCTCATTTCA GCGGATCTGG TGCGGCTGCT GTACGGCCCC
CAGTGGAGCG ACGCGGCCTG GGTGCTGGGG ATTTTGTTTT TGAGCATGCC GGCGTATGTG
GTGTGGGGCC TGTCGACCCC CGTACTCTGG AATACCGGGC GCAAGCACCA TGAATTTGCG
CTGCAGCTGC CGCTTGTGGT CCTGGGCGCT TTGGGCTTTT ACCTCTATGC CGCACAGGGA
ATCCATGCGG CCGCAGCCGT TGCAGCTGCG CTGCTGGTAC TGCGCGCACT GGTCGTGGGC
ACGGCCGCTT TCCGGGCGGT ACAGCTGCCC TGGACCGCCC TGCTGCCCCA TGCAGCGCGC
GGCCTGCTGC TCAGCGCCTT GTGCGCCGCG GCTGCGCTCG CGGGTCAGCA TGCCGTCGCG
CGGTTTGACA TGCCGCTGCT GTCGCTGGCA GCCAGCACGC TGATGGTCCT GCTTGTCATG
GCCTTGCTCG TCGCCGTGCG CCCGCAGGCG CTGGGTGATC AAACCGCCGG TATGCTCAGC
CGGTTCTTCC CGGGACTGGC CGGCCACCTC GGCGCAACAC CTGCATCACC GCTTGCAGAG
CCCCTCGGCG AACAGCGCCT CTGA
|
|---|
| Protein sequence | MSTGGLGRPG VAAVKWSAVS TGARFALQLV AQVVLARTLG PDIFGVFAIG MVVLTFATFF
SGFGFSWSLL QRETLSEEDI RFAWTWQLIV GALTTLAVYF LAPLLAVYFR EPRAQAVVEW
LSLACLLAAA AAPSSYLLQR DLNFKAVGLI QVGSYAAGYV AVGVPMALLG WGAASLVAAW
LVQSGVLLVA SYALKPHAVR PLFWYPDAAA AVGTGRAVFA TNIVNWLLNN LDRVLIGRLL
NAQALGLYNV AYNLATMPNT LLLGALQPAF LAAGARLQGD LQRLGRAYLQ MLATVFVLGL
PAFVFLALIS ADLVRLLYGP QWSDAAWVLG ILFLSMPAYV VWGLSTPVLW NTGRKHHEFA
LQLPLVVLGA LGFYLYAAQG IHAAAAVAAA LLVLRALVVG TAAFRAVQLP WTALLPHAAR
GLLLSALCAA AALAGQHAVA RFDMPLLSLA ASTLMVLLVM ALLVAVRPQA LGDQTAGMLS
RFFPGLAGHL GATPASPLAE PLGEQRL
|
|---|
| |