| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1839 |
|---|
| Symbol | |
|---|
| ID | 4015510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 1900753 |
|---|
| End bp | 1902042 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637941508 |
|---|
| Product | intracellular polyhydroxyalkanoate depolymerase |
|---|
| Protein accession | YP_548670 |
|---|
| Protein GI | 91787718 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
|---|
| TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0639707 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCGC TCGCTCTGGT GCAGCAAGAA AGAAGCATGC TTTATCACGC CTATCAGTTG
CAGTCTGACC TGACCTCCCC CCTGCGGATG TTCGCCGAAC AGGCCGGGCT GATGGTCGGC
TCGGTCAAGT CCGGCCTGTC CAGCCCGGCC CCCCTATTCC CCTGGATCAG TCAATCGGCC
AGCAAGCTCT CTGCGGCCTG CGAAGTGCTC GCTCGCCTGC GCCTGACGCA CAGTAGGCCA
GCCTACAACC TGGACACCGT GGAAGTCGCC GGCGAACCCG TCGCCGTGAC GGAGCACAAA
GTCTGCGAGT TGCCTTTTGG CACCCTGCTG CATTTCAGGA AAGCGCTGGC CACCCCCATG
CCGCGCGTGC TGCTGGTCGC GCCCTTGTCC GGCCACTTCG CCACGCTGCT GCGTGAAACG
GCGCGCACGC TGCTGGCCGA CCATGACGTG TACATCACCG ATTGGCACAA CGCCCGCGAT
GTGCCTTTGT CCCAGGGTGA GTTCGGGCTG GACCACTACA CCGACTACCT GATCAAATTC
CTGGAAGTGC TGGGCCCTGG CACGCACATG ATCGCAGTCT GCCAGCCCTG CGTGGCAGCC
CTTGCCGCCA CCGCACTCAT GGCCGAAGAC GACAACCCGG CACAGCCGAG CAGCCTGACC
CTGATGGCCG GGCCGGTGGA CTGCCGGATC AACCCCACCG GCGTCAATGA ACTGGCCAAC
AGCAAGCCCA TCGAGTGGTT TGAAAAAAAC CTGATCAGCC CCGTACCCTG GCCCCACAAG
GGCATGATGC GGCAGGTCTA CCCCGGTTTT TTGCAGCTCA CGGCGTTTTT ATGCATGAAC
CTGGAGCGAC ACAAAAAGTC ATTTGAAGAT CTGTACCGGC ATGTCCGGGA GGGCGAATTT
GACAAGGCCC AGATCATCCG CGCGTTTTAT GACGAATACC TGGCCGTCAA TGACCTGCCC
GCCGCCTTTT ACCTGCAAAC TGTCGCCAAG GTATTCCAGA CCTATGACCT GCCGCGGGGC
GAACTCACCT GGCATGGCAG AAAAGTCAAT CTCCAGGCGA TACGGCGTAC CGCCTTGCTG
ACGGTGGAGG GTGAGCGGGA TGACATCTGC GCTGTCGGCC AGACGGTCGC CGCGCAAGAC
CTGTGCAGCA GCATCCGGCC TTACATGAAG ACCCACCACG TGCAAACCGG CGTGGGGCAT
TACGGCGTCT TCAGCGGCAA AAAATGGAAC CAGCAAATCT ACCCGCGGGT GCGGGACGTC
ATTTACAACA GCGACAACAG CGCAGGCTGA
|
|---|
| Protein sequence | MPPLALVQQE RSMLYHAYQL QSDLTSPLRM FAEQAGLMVG SVKSGLSSPA PLFPWISQSA
SKLSAACEVL ARLRLTHSRP AYNLDTVEVA GEPVAVTEHK VCELPFGTLL HFRKALATPM
PRVLLVAPLS GHFATLLRET ARTLLADHDV YITDWHNARD VPLSQGEFGL DHYTDYLIKF
LEVLGPGTHM IAVCQPCVAA LAATALMAED DNPAQPSSLT LMAGPVDCRI NPTGVNELAN
SKPIEWFEKN LISPVPWPHK GMMRQVYPGF LQLTAFLCMN LERHKKSFED LYRHVREGEF
DKAQIIRAFY DEYLAVNDLP AAFYLQTVAK VFQTYDLPRG ELTWHGRKVN LQAIRRTALL
TVEGERDDIC AVGQTVAAQD LCSSIRPYMK THHVQTGVGH YGVFSGKKWN QQIYPRVRDV
IYNSDNSAG
|
|---|
| |