| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1329 |
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| Symbol | |
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| ID | 4011975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | + |
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| Start bp | 1367197 |
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| End bp | 1369440 |
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| Gene Length | 2244 bp |
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| Protein Length | 747 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637941008 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_548177 |
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| Protein GI | 91787225 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAACA TCCAGACCCA AGCCCATGTG CTCTCAACCC TGGCCACATT GCCCAGGTTT
CCGATTGCTG TCGTTTCGAT AGCGGTTTGT GTTCTTTTTG CAGGGGATGG GAGGCCATTG
CATGCCCAAA CACCGCGAAC CAGCCCGGCG CCGGCCAACG GCGCAGTGCG GCCGGGTGGC
CCGGTCACCC TGAATTTCGC CAACGCGGAA ATCGAAGCCG TGGCGCGCAC CATGGCGGTC
ATTACCGGCC GCAATGTGGT GGTCGATCCG CGTGTCAAGG GCACGATGAC GCTGGTGACC
AGCTCGCCTG TGACGCCGGC GCAGGCGCTG CGGCAGTTTT CCGCCCAGTT GCGGACGCAG
GGCTTTGCGC TGGTGGAGTC GTCCGGCCTG TACCTCGTGG TGCCGGAGGC GGATGCCAAG
CTGCAAAGCG GCACTGTGTC CGCCGGTCGC GTGCCGCCCG CGAGCGGGCA GATCCTCACC
CAGATTTTCC GGCTCAATCA CGAGACGGCC AACAACCTGG TGCCGGTATT GCGCCCGTTG
ATCAGCCCGA ACAACACCAT CAATGTGAAC CCGGGGAACA ATTCGCTGAT CATCACCGAT
TACGCAGACA ACCTGCAGCG CATCGGCACC ATCATCGCGG CCCTCGATGT GGCGAATGCC
ACGGGCGTGG AAGTCATCCG CCTGCAGCAC GCCATCGCCA CCGACCTGGC ACCGCTGGTT
TCCCGCCTTA TCGACTCCGC CGGAGCGGGG GGCGTCGCTC CGGGCCAGGC CGATACGTCC
TTCAGGACGA CGCTGCTGGC CGAGCCGCGC AGCAACTCGC TGATCCTGCG CGCCGCCAAT
CCGGCGCGCC TGGCGTTGGT CAGGACGCTG GTGGAAAGGC TCGATCAGGC CGCGATCGGT
GGCAGCGGCG CGGATCCTGC CAGCGGCAAT ATTTATGTGG TTTACCTGAA GAACGCCGAT
GCCACCAAGC TGGCGACCAC CTTGCGGGCC GCCATGGCGG CAAACACCCT CGGCGCCATT
GCGGCGGGCC CCGTGGTAAC CGGTGCCCCG CTGCCTGGTC CCGGATCAGT CGCAGCGGCA
GGCGCCGCAA CCGCCACCCT CACCAGCAGC CAGCCATCCA CCGGCGGGCA GATCCAGGCC
GACCCGTCCA CCAACTCACT GATCATTACC GCGCCCGAGC CGCTATATCG CCAGCTGCGT
GCGGTGATCG ACAAACTTGA CGCGCGGCGC GCCCAGGTCT TCGTTGAAAG CCTGATCGCG
GAGGTCAATG CCGACAAGGC TGCCGAGTTT GGCATCCAGT TCCAGGGCGC GCTGGGTAAA
AAAGGCGACA ACAACATCGG CTTGCTGGGT ACCAACTTCA ACATCGGCGG CACCAATATC
ATCACCCTCG CCACCCAGGC TGCCGCCGGC GTCATCGCGC CATCCACGGG GGCCAACCTT
GGCGTGGCGC ATCTGACCAA CGGCGTGTAT GTGCTGGGAT TCCTGGCGCG ATTCCTGGAG
GCCAATGGCG CCGGCAATAT CCTTTCGACT CCCAACCTGC TGACGCTGGA CAACGAGGAG
GCGCGTATCG TGATTGGTCA GAACGTGCCG TTTATCACCG GCCAGTACAC CAACGCCAAC
ACCAGTGCCG GTTCAGTCAA TCCGTTCCAG ACCATCGAAC GAAAAGATGT GGGCCTGACG
CTGCGGGTAA AACCCCAGAT CAGTGAAAAT GGCACCGTGA AAATGCAGAT CTTCCAGGAA
GTCAGCAGCG TGCAGCCTTC ATCGATCAAC TCCGCAACCG GCCTGATCAC CAACAAGCGA
TCGATCGAGT CCAACGTGCT GGTGGATGAT GGCGCCATCG TGGTGCTGGG TGGCCTGCTG
CAGGACGAAT ACTCGGGAAA CGTGGAAAAA GTGCCGGGCC TGGGTGATAT TCCGATACTG
GGTCACCTCT TCAAGGGGGA AACACGCTCG CGCAAAAAGA CCAACCTGAT GGTGTTCCTG
CGGCCGGTGG TGGTACGCGA TGCGCCGTCC AGCGAAAGCC TGTCCATGGA CCGCTATGAC
CTGATGCGAG CCGTGCAAAA AGATGCCCAG CCCGCGTCCA GCGTGGTGGT ACCTGTCAAT
GAGTCAGCGG TGCTGCCGCC GCTGCGTCCG GCTGCCGCAA GCTCCGTCGT GCCGCCTGCC
GCATCACCAG AAGCACCGCC GGCAGTGCCG ACTGTCACCC CGCCGCCCGT CGCAACCCCG
CTCGTGCCCG CCCCGGGCCA GTAA
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| Protein sequence | MTNIQTQAHV LSTLATLPRF PIAVVSIAVC VLFAGDGRPL HAQTPRTSPA PANGAVRPGG
PVTLNFANAE IEAVARTMAV ITGRNVVVDP RVKGTMTLVT SSPVTPAQAL RQFSAQLRTQ
GFALVESSGL YLVVPEADAK LQSGTVSAGR VPPASGQILT QIFRLNHETA NNLVPVLRPL
ISPNNTINVN PGNNSLIITD YADNLQRIGT IIAALDVANA TGVEVIRLQH AIATDLAPLV
SRLIDSAGAG GVAPGQADTS FRTTLLAEPR SNSLILRAAN PARLALVRTL VERLDQAAIG
GSGADPASGN IYVVYLKNAD ATKLATTLRA AMAANTLGAI AAGPVVTGAP LPGPGSVAAA
GAATATLTSS QPSTGGQIQA DPSTNSLIIT APEPLYRQLR AVIDKLDARR AQVFVESLIA
EVNADKAAEF GIQFQGALGK KGDNNIGLLG TNFNIGGTNI ITLATQAAAG VIAPSTGANL
GVAHLTNGVY VLGFLARFLE ANGAGNILST PNLLTLDNEE ARIVIGQNVP FITGQYTNAN
TSAGSVNPFQ TIERKDVGLT LRVKPQISEN GTVKMQIFQE VSSVQPSSIN SATGLITNKR
SIESNVLVDD GAIVVLGGLL QDEYSGNVEK VPGLGDIPIL GHLFKGETRS RKKTNLMVFL
RPVVVRDAPS SESLSMDRYD LMRAVQKDAQ PASSVVVPVN ESAVLPPLRP AAASSVVPPA
ASPEAPPAVP TVTPPPVATP LVPAPGQ
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