| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1289 |
|---|
| Symbol | |
|---|
| ID | 4012182 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 1331033 |
|---|
| End bp | 1331596 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637940966 |
|---|
| Product | tripartite ATP-independent periplasmic transporter DctQ |
|---|
| Protein accession | YP_548137 |
|---|
| Protein GI | 91787185 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.895715 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAACCG ACACCTTGCA GCCTCCGGTC GCCCTGGGCC GGGACATTGA CCGGTCTGCC
TACGCCCGAT GGCTGGGAAA GCTGACGGAT GGTATTTGCG GCCTGACGGC TGCCGGGACT
GTACTGGTGG TTCTGACGCA GGTGATCAGC CGCCTGCTGG GTGCACCGAT CTCCTGGACC
GAGGAACTGA CCCGAGCCTT GTTCATCTGG ATGATATTTA TCGGCCTGGC GACGAGCATG
CGACACGCCG ACGCAGCCCG TGTGACCATC TTCATGGAAA CCCTGCCCCG CTCATTAAGG
CGGCTCGCAC TGCCGATCTA CCTCTTCTGC TGCCTGGGTT TTTTCGCGCT GATGGGCTGG
ACGGGCGCCA CCATGGTACG CCAGCAAATA CTGATGAATG AATCCATCGC CACGCTGGGC
TGGCCCAGCT GGGTCATTGG CCTGGTCATG CCAGTCTCCG CGATTTTGGC CATTCTCTGC
ACGCTGGAGT CCTTGCGCCA GCACCGCGCC GCCATCGCTC TCGATCCTTC GAAAGCCACA
CCCAAACAGG AAGCTGCATC ATGA
|
|---|
| Protein sequence | MSTDTLQPPV ALGRDIDRSA YARWLGKLTD GICGLTAAGT VLVVLTQVIS RLLGAPISWT
EELTRALFIW MIFIGLATSM RHADAARVTI FMETLPRSLR RLALPIYLFC CLGFFALMGW
TGATMVRQQI LMNESIATLG WPSWVIGLVM PVSAILAILC TLESLRQHRA AIALDPSKAT
PKQEAAS
|
|---|
| |