Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bpro_1058 |
Symbol | dapF |
ID | 4012045 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas sp. JS666 |
Kingdom | Bacteria |
Replicon accession | NC_007948 |
Strand | + |
Start bp | 1085196 |
End bp | 1086095 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637940735 |
Product | diaminopimelate epimerase |
Protein accession | YP_547908 |
Protein GI | 91786956 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.553091 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.543638 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGGTCGG CGGATAATGG CGCAATGCTA ATCCGTTTTA CAAAAATGCA GGGTGCGGGC AACGACTTTG TGATGCTCGA CGAGACCCGC GGGCGCCTGA ACCTGTCGAC GGCACAGTAC CGTTTTCTGG CCGACCGGCA CTTCGGCGTC GGCGCCGACC AGATTCTGTC GGTGCGGCCT TCCCCCGGGG AGGGCATCGA CTTTGAATAT GTGATTCACA ACGCCGATGG CGGCGAAGTG GAACAGTGCG GCAATGGGGC ACGCTGTTTT GTGCGTTTTG TGCGCGAACA GGGGCTGACC AGCAAGGATG CGGTCAGGGT CAAGACCCTG AGCGGCGTGA TCGAGCCGCG CATGCAGGCG GATGGCCGCG TGACGGTGGA CATGGGCGCG CCGGTGTTTG AGTTGGCGCG CATTCCCTTC GATGCGGCGG GGTTGACGGC GCAGCCCGCT GGCTCATGGG AGAAATGGCC GCTGACCCTT GAAGACAAGG CGCTTTCAGC GACTGTTTCC ATCGCCGTGC TGTCGATGGG CAATCCCCAT GCGGTGCAGC TGGTCGACGA CGTAGATACG GCGCCGGTGC TGGAGACCGG CCCCTTGATT GAGCACCATA TGCGTTTCCC CAAACGCGTC AATGCGGGCT TCATGCAGGT CGTCTCGCGC AGCCGCATCC GCCTGCGGGT GTACGAGCGC GGCGCTGGCG AAACACTGGC CTGCGGCACC GGCGCCTGTG CGGCGGTGGT GGCCGGCATA CGCTGGGGCC TGCTCGATGC GCGGGTGGAC GTGCAGACCC GCGGCGGCCA GCTGACGATT GAATGGGCGG GCGGCTTCGA TGCCCCGGTC ATGATGACCG GCCCGGCCAC TACCGTGTTC GAGTCCGAGA TTGAAGTTCC CGAGTTATAA
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Protein sequence | MRSADNGAML IRFTKMQGAG NDFVMLDETR GRLNLSTAQY RFLADRHFGV GADQILSVRP SPGEGIDFEY VIHNADGGEV EQCGNGARCF VRFVREQGLT SKDAVRVKTL SGVIEPRMQA DGRVTVDMGA PVFELARIPF DAAGLTAQPA GSWEKWPLTL EDKALSATVS IAVLSMGNPH AVQLVDDVDT APVLETGPLI EHHMRFPKRV NAGFMQVVSR SRIRLRVYER GAGETLACGT GACAAVVAGI RWGLLDARVD VQTRGGQLTI EWAGGFDAPV MMTGPATTVF ESEIEVPEL
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