Gene Bpro_1058 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBpro_1058 
SymboldapF 
ID4012045 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas sp. JS666 
KingdomBacteria 
Replicon accessionNC_007948 
Strand
Start bp1085196 
End bp1086095 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content64% 
IMG OID637940735 
Productdiaminopimelate epimerase 
Protein accessionYP_547908 
Protein GI91786956 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0253] Diaminopimelate epimerase 
TIGRFAM ID[TIGR00652] diaminopimelate epimerase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.553091 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.543638 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGTCGG CGGATAATGG CGCAATGCTA ATCCGTTTTA CAAAAATGCA GGGTGCGGGC 
AACGACTTTG TGATGCTCGA CGAGACCCGC GGGCGCCTGA ACCTGTCGAC GGCACAGTAC
CGTTTTCTGG CCGACCGGCA CTTCGGCGTC GGCGCCGACC AGATTCTGTC GGTGCGGCCT
TCCCCCGGGG AGGGCATCGA CTTTGAATAT GTGATTCACA ACGCCGATGG CGGCGAAGTG
GAACAGTGCG GCAATGGGGC ACGCTGTTTT GTGCGTTTTG TGCGCGAACA GGGGCTGACC
AGCAAGGATG CGGTCAGGGT CAAGACCCTG AGCGGCGTGA TCGAGCCGCG CATGCAGGCG
GATGGCCGCG TGACGGTGGA CATGGGCGCG CCGGTGTTTG AGTTGGCGCG CATTCCCTTC
GATGCGGCGG GGTTGACGGC GCAGCCCGCT GGCTCATGGG AGAAATGGCC GCTGACCCTT
GAAGACAAGG CGCTTTCAGC GACTGTTTCC ATCGCCGTGC TGTCGATGGG CAATCCCCAT
GCGGTGCAGC TGGTCGACGA CGTAGATACG GCGCCGGTGC TGGAGACCGG CCCCTTGATT
GAGCACCATA TGCGTTTCCC CAAACGCGTC AATGCGGGCT TCATGCAGGT CGTCTCGCGC
AGCCGCATCC GCCTGCGGGT GTACGAGCGC GGCGCTGGCG AAACACTGGC CTGCGGCACC
GGCGCCTGTG CGGCGGTGGT GGCCGGCATA CGCTGGGGCC TGCTCGATGC GCGGGTGGAC
GTGCAGACCC GCGGCGGCCA GCTGACGATT GAATGGGCGG GCGGCTTCGA TGCCCCGGTC
ATGATGACCG GCCCGGCCAC TACCGTGTTC GAGTCCGAGA TTGAAGTTCC CGAGTTATAA
 
Protein sequence
MRSADNGAML IRFTKMQGAG NDFVMLDETR GRLNLSTAQY RFLADRHFGV GADQILSVRP 
SPGEGIDFEY VIHNADGGEV EQCGNGARCF VRFVREQGLT SKDAVRVKTL SGVIEPRMQA
DGRVTVDMGA PVFELARIPF DAAGLTAQPA GSWEKWPLTL EDKALSATVS IAVLSMGNPH
AVQLVDDVDT APVLETGPLI EHHMRFPKRV NAGFMQVVSR SRIRLRVYER GAGETLACGT
GACAAVVAGI RWGLLDARVD VQTRGGQLTI EWAGGFDAPV MMTGPATTVF ESEIEVPEL