Gene Bpro_1040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBpro_1040 
Symbol 
ID4012258 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas sp. JS666 
KingdomBacteria 
Replicon accessionNC_007948 
Strand
Start bp1066209 
End bp1066958 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content59% 
IMG OID637940718 
Productextracellular solute-binding protein 
Protein accessionYP_547891 
Protein GI91786939 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0410821 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTTC GTCGCAACTT CCTGCTGGCC AGCCTCACAG CCCTGACCCT CGGCACCACC 
AGCGCGCATG CACAAGACAA TGCGCTGCGC GTGGGCACCG ATGCCACCTT CCCGCCCATG
GAATTCGTGG AAAACGGCAA GCGCACGGGC TTTGACGTCG AGCTGGTTGA AGCCATCGCC
AAGGCGATGG GCAAGCAGGT CGAATGGGTA GATATCGATT TCAAGGGGCT GATCCCCGGC
CTCATGTCCA AGCGTTTTGA CATGGCCGTT TCGGCCATTT ACATCACCGA TGAACGCAAG
AAGGTCGTCG ATTTCACCAA CTCCTACTAT GCCGGCGGCC TGGTGGCCAT GACCAAAGAG
GGCAATACCG CCATCAAAAA GCTGGCCGAC CTCGAGGGCA AAAAGGTCAC TGTGCAGGTG
GGCACCAAGT CGGTGGGCTA TCTGCAGGAG CACTATCCCA AGGTGCAACG GATCGAGGTA
GAAAAGAACC AGGAAATGTT CAACCTGGTG GACATTGGCC GTGCCGATGC CGCCGTGACG
GGCAAGCCCG CCGCCTTTCA GTATGTGCGC ACGCGCCCGG GCCTGCGCGT GCTGGAAGAG
CAGCTGACCA CCGAGGAATA CGGCATGGCG CTGCGCAAGG ACACGCCCGA GCTCACCAGG
GCGGTGAACG GTGCGATCGC CAAACTCAAG GCCGACGGCA CCTATGCGGC CATCGTGAAA
AAATGGTTCA GCAACAGCGC TGGCAAGTAA
 
Protein sequence
MKFRRNFLLA SLTALTLGTT SAHAQDNALR VGTDATFPPM EFVENGKRTG FDVELVEAIA 
KAMGKQVEWV DIDFKGLIPG LMSKRFDMAV SAIYITDERK KVVDFTNSYY AGGLVAMTKE
GNTAIKKLAD LEGKKVTVQV GTKSVGYLQE HYPKVQRIEV EKNQEMFNLV DIGRADAAVT
GKPAAFQYVR TRPGLRVLEE QLTTEEYGMA LRKDTPELTR AVNGAIAKLK ADGTYAAIVK
KWFSNSAGK