Gene Bpro_0056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBpro_0056 
Symbol 
ID4011775 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas sp. JS666 
KingdomBacteria 
Replicon accessionNC_007948 
Strand
Start bp57853 
End bp58518 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content59% 
IMG OID637939742 
Producthaloacid dehalogenase, type II 
Protein accessionYP_546921 
Protein GI91785969 
COG category[R] General function prediction only 
COG ID[COG1011] Predicted hydrolase (HAD superfamily) 
TIGRFAM ID[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase
[TIGR01428] 2-haloalkanoic acid dehalogenase, type II 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.423045 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTTCC GCCCGAAATT CATTACCTTT GACTGCTACG GCACCCTGAC ACGTTTTCGC 
ATGGGCGATA TGGCGCGCGA GATGTTTGCC GACCGCATCC CGGCCGCGCA GATGGAGCTG
TTTGTCGCCG ACTTCAGCGC CTACCGTTTT GACGAAGTGC TGGGCGCCTG GAAGCCTTAT
GCCGATGTGC TCAGGAACGC CTTGAACCGC ACCTGCAAAA AATGGAACAT CAAGTGCACC
GACGCCGAAG GCCGGGCTTA CTACGACGCC GTGCCGACCT GGGGCCCGCA TGCCGATGTG
CCGGCCGGCC TGTCGCGCAT CGCCGACAAG ATTCCGCTGG TCATTCTTTC CAACGCGTCC
AACGACCAGA TACACAAGAA CGTAGACAAG CTCGGTGCGC CATTTCATCG TGTTTTCACC
GCTCAGCAGG CCCAGGCTTA CAAGCCGCGT CTGCAGGCCT TTGAGTACAT GCTGGACCAG
CTCGGTTGCG GTCCTGAAGA CATCCTGCAC GTGTCGTCCA GCCTGCGTTA CGACCTGATG
TCGGCTGATG ACCTGGGCAT CAAGAACAAG GTGTTCGTCA ATCGCGGTCA TGGTCCTGGC
AACCCGGCGT ACAACTACGT CGAGATCCAG GACATCGGCG GCTTGCCCGG TGTGGTCGGC
CTTTAA
 
Protein sequence
MTFRPKFITF DCYGTLTRFR MGDMAREMFA DRIPAAQMEL FVADFSAYRF DEVLGAWKPY 
ADVLRNALNR TCKKWNIKCT DAEGRAYYDA VPTWGPHADV PAGLSRIADK IPLVILSNAS
NDQIHKNVDK LGAPFHRVFT AQQAQAYKPR LQAFEYMLDQ LGCGPEDILH VSSSLRYDLM
SADDLGIKNK VFVNRGHGPG NPAYNYVEIQ DIGGLPGVVG L