Gene Mfla_1469 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMfla_1469 
Symbol 
ID4000441 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacillus flagellatus KT 
KingdomBacteria 
Replicon accessionNC_007947 
Strand
Start bp1577038 
End bp1577874 
Gene Length837 bp 
Protein Length278 aa 
Translation table11 
GC content52% 
IMG OID637938380 
Productsqualene/phytoene synthase 
Protein accessionYP_545578 
Protein GI91775822 
COG category[I] Lipid transport and metabolism 
COG ID[COG1562] Phytoene/squalene synthetase 
TIGRFAM ID[TIGR03465] squalene synthase HpnD 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.093499 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCCGC AAGAATATTG CCAGAATAAA GCCGCTGCCA GCGGCTCCAG CTTCTACTAT 
AGCTTCCTGT TCTTGCCGAA AGCCAAACGA GAGGCCATTA CCGCCTTGTA CGCTTTTTGC
CGGGAGGTAG ATGATATTGC CGATGACGTT CAGGATGTCA ATGTCGCGCA AACCAAGCTC
AACTGGTGGC GGAGTGAAAT CATCAATCTT TTCGAGGGGA AGCCACAGCA TCCCGTTACC
ATGGCCCTAC AGTCTCCGGT AAGGGAGCTC AAGCTCAAGC AGCAGCATTT TCTCGAGATC
ATCAATGGCA TGCAGATGGA CCTGGAGCAA AACCGTTATC GCGACTTTGA AGAGCTCGAG
CTTTACTGCT ATCGCGTTGC CAGCGTAGTT GGCTTGCTCT CCGCCTCCAT TTTCGGGTAC
AGCAACCCGC AAACCCTGCA ATATGCATTG GATTTGGGCA TGGCCTTTCA GCTTACCAAT
ATCACGCGTG ATGTCGGTGA GGATGGCCGC AGAGGACGGA TTTATCTGCC GCTGGATGAA
ATTAGTCGCT TCGGGGTCAG CGAGCAGGAT ATCCTGCAAG GCAAGGCCTC AGACAATATG
CGGCAATTGC TTGAATTCCA GGTGGAGCGT GCAGAACGCT ATTACGAAAA GGCACTTGCC
GAACTGCCTC TGGAAGACAG AAAGCAACAG CGTACTGGCC TCATCATGGC ATCCATTTAC
CGCACCTTGC TCAAGGAAAT CAAGAGAGAC GATATTCAGG TTGTGCTGAA TGCGCGTGTT
TCCCTTACTC CTATACGAAA GCTCTGGCTT GCCTGGTTGA CATGGATCCG CAATTAG
 
Protein sequence
MSPQEYCQNK AAASGSSFYY SFLFLPKAKR EAITALYAFC REVDDIADDV QDVNVAQTKL 
NWWRSEIINL FEGKPQHPVT MALQSPVREL KLKQQHFLEI INGMQMDLEQ NRYRDFEELE
LYCYRVASVV GLLSASIFGY SNPQTLQYAL DLGMAFQLTN ITRDVGEDGR RGRIYLPLDE
ISRFGVSEQD ILQGKASDNM RQLLEFQVER AERYYEKALA ELPLEDRKQQ RTGLIMASIY
RTLLKEIKRD DIQVVLNARV SLTPIRKLWL AWLTWIRN