| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4834 |
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| Symbol | |
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| ID | 3973538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 5394321 |
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| End bp | 5395757 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637927946 |
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| Product | homospermidine synthase |
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| Protein accession | YP_534675 |
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| Protein GI | 90426305 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG5310] Homospermidine synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.109645 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCCC CCGCCGCCAC AATCCACGCC AAGATTTCCG GCCCCATCGT GATGATCGGC
TTCGGCTCGA TCGGCAAAGG CACGCTGCCT TTGATCGAGC GGCATTTCGA ATATGACAAG
CAGCGCTTCG TCATCATCGA TCCGCACGAG GACGGCGAAC TGGCGAAGAA GCATGGCGTG
CGCTTCATCA GCTCGGCGGT GACCAAGGAC AATTTCCGCG AATTGCTGAT CCCGCTTTTG
ACCGAAGGCG GCGGCCAGGG CTTCTGCGTC AACCTGTCGG TCGACACCGG CTCGGTCGAC
ATCATGACGA TGTGCCAGGA AATCGGCGCG CTCTATATCG ACACCGTGGT CGAGCCGTGG
CTGGGCTTCT ATTTCGACAA GAGCGCCGGC CCGGAGAAGC GCTCCAACTA CGCGCTGCGC
GAGACCCTGC TCGCCGCCAA GGCCAAGGCC GGCGAAGGCG CCACCACCGC GGTCTCCACC
TGCGGCGCCA ATCCCGGCAT GGTGTCGTGG TTCGTCAAGC AGGCGCTGCT CGACATCGCG
AAAGACACCG GCACCGAGAT CAACGAGCCG AAGAGCCGCG AAGGCTGGGG GCAATTGGCG
CAGAAGCTCG GCGTCAAGGG CATCCACATC GCCGAGCGTG ACACCCAGCG CTCGAAGAAG
CCGAAGCCGA TGAACGTGTT CGTCAACACC TGGTCGGTCG AAGGCTTCGT TTCCGAAGGC
TTGCAGCCGG CCGAGCTCGG CTGGGGCACC CATGAGAAAT GGATGCCGGA CAACGGCCGC
ACCCACACCG AAGGCTGCGG TGCGGCGATC TATCTGCTGC AGCCCGGCGC CAACACCCGG
GTTCGCTCCT GGTGCCCGAC CCCCGGTGCG CAATACGGCT TCCTGGTCAC CCACAACGAG
TCGATCTCGA TTGCCGACTA CTTGACCGTG CGCGACGGCC AGAACGTGGT GTACCGCCCG
ACCTGCCACT ACGCCTATCA CCCGGCCAAC GACGCGGTGT TGTCGTTGCA CGAAATGTTC
GGCGCCACCG GCAAGATGCA GCCGAAGTGG CACATTCTGG ACGAGAACGA GATCGAGGAC
GGCATCGACG AGTTGGGCGT GCTGGTCTAT GGCCACGCCA AGAACGCCTA TTGGTACGGC
TCGCAGCTCT CGATCGAGGA AACCCGCGAG GTCTGCCCGT ATCAGAACGC CACCGGCATG
CAGGTGTCGT CGGCGGTGCT CGCCGGCATG GTGTGGGCGC TGGAAAATCC CAATGCCGGC
ATCGTCGAAG CCGACGAATT GGACTTCCGC CGCTGCCTCG AAGTGCAGAC GCCGTATCTC
GGCCCGGTGA AAGGCTTCTA CACCGATTGG ACTCCGCTCA GCGATCGCCC CGGCCTGTTC
CCGGAAGACA TCGACGCCAC CGATCCGTGG CAGTTCCGCA ACGTGCTGGT TCGCTGA
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| Protein sequence | MPAPAATIHA KISGPIVMIG FGSIGKGTLP LIERHFEYDK QRFVIIDPHE DGELAKKHGV
RFISSAVTKD NFRELLIPLL TEGGGQGFCV NLSVDTGSVD IMTMCQEIGA LYIDTVVEPW
LGFYFDKSAG PEKRSNYALR ETLLAAKAKA GEGATTAVST CGANPGMVSW FVKQALLDIA
KDTGTEINEP KSREGWGQLA QKLGVKGIHI AERDTQRSKK PKPMNVFVNT WSVEGFVSEG
LQPAELGWGT HEKWMPDNGR THTEGCGAAI YLLQPGANTR VRSWCPTPGA QYGFLVTHNE
SISIADYLTV RDGQNVVYRP TCHYAYHPAN DAVLSLHEMF GATGKMQPKW HILDENEIED
GIDELGVLVY GHAKNAYWYG SQLSIEETRE VCPYQNATGM QVSSAVLAGM VWALENPNAG
IVEADELDFR RCLEVQTPYL GPVKGFYTDW TPLSDRPGLF PEDIDATDPW QFRNVLVR
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