| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4652 |
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| Symbol | |
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| ID | 3972241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 5202504 |
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| End bp | 5204498 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637927764 |
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| Product | Outer membrane autotransporter barrel |
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| Protein accession | YP_534493 |
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| Protein GI | 90426123 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.398364 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAGCA TCACGGCTAT TCGGGTCGTT CGGCGACGCG GCGACCGGCG CGGCGGCGTC
ACGACACCGC GTGTCAAACG CGCCGCGGCG GCCACGGCAG TAGCGGTGCT GTCACTCGGC
GCAACGCTCG GTTCGGCGCA GGCGCAGTTC ACGCGCGTCT ATGGCTTCGG CGACAGCTAT
GCGGATACCG GCACCGCGCC GGGCGGCGCG TTTCGGCTCG GTCACGAGCC CTGTGTTTAT
CCGGGCGTTT GCTCCTTCAC CGGCAGCACC ACCTTCGTGC AGACGCTGCA ATCGCTGTAT
GCCGCGCCGG AGATGGTGAA TTATGCGATC GGCGGCGCGC GGACCAGCAA CTCCAACACC
CTTGGCTTTC TCGGCAGCAA TTACGGCTTC CCGTATGAAC TCGCCCGGCT GGCCCATGAC
GGCGTCCGGT TCACCGATCG CGACCTGATC GCGCTGTCGA TCGGCGGCAA TGATTCATCG
CAGCTCGTCA ACGACGTCGG CGCCGCCAGG ACGTTGGGAA CACAGGCCGC GGCGCGCGCC
GTCAACGGCA CCGGCGTCGG CACTATCACC GGCACCTTCG ATGGGGTCAC CTACAACGAC
GTCGCGACCT ATGGCGTGCA GCAGCTGGTC GCCGCCGGGG CCCGCAACAT CGCCTGGTTC
AGCGCCGGCA ATTCGAAGTA TTTTCCCGAA CCGGAGGGCG GTGCTGCGGT TCAGGCCCCG
GCGCGCGACG CGTTTGCGCA TACCTATTAT CAGGAACTGC AGACCTTGCT GCGGCCGATG
GCGCAGGCCG GCGTCCGCAT CTTCCTGTTC AACTATGAAA TCCTGCAGCG GCGGATCTTC
GAGAATGCGG CGATCTACGG TTTCAGCGCC GTGCCGGGCT GCGAGGCCAA TGGCGGCGGC
TCCATCCCTC AGGTCACAGG CTGCTTCTAC GAAAACTCGG TGCATCCGAC CGGCGCGGCG
ATGGCGCTGA TCGCCAGCTA TATGGCCAAC CAGATCGACG CGCCGACCAC CGTGGTGCCG
CAGGGCAGCA TCTCCACCGC GCTGGCGACG GGCTTCACCG GGTCGGTGTT CGGCCGGCTC
GACGCCCAGC GTAGCCTCGC GCCGTTCGGC TTGGGCTCCG CGCTGGCCTA TGCGGGACCG
CCGAAAGCGG CGCCAGCGGC CAACCCGGCG GATCGTTGGT CGATCTATGG CGCGGCCAGC
TACGCCAACG GCAGCCGCGA CCGGCAATTC TACGGCTCCG GCTACGACTA CAATTCGGTC
GGCGGTATCT TCGGGGCGGA GTATCGCCTC GACCAGAACT GGCGGGTGGG CGGGGTGTTC
GGCTATTCGC AGCCGGACGT CGAACTCGGC GTGCAGAACG CGCGAGAGCG CATCGATGCC
TATCAGTTCG CCGGCTACGC CTCCTACGCC GACGCGCATT GGTTCGCCGA CGGCCTGCTC
GGCTACGGCC GCCATGACTT CGCGCTGCAG CGGCAAGGCA TCATCGATAC CATTCGGGGC
AATACCAGGG CCGACGTGTT CACCGTCGCC GGAAAGGCCG GATACCTGTT CGATGTCGGC
CAGCTCCGCG TCGGGCCGCT CGCCAGCCTG ACTTATAGCA ACGCGCAGAT CGACGGCTAC
ACGGAAACCG GCGACGTGCT GCTGACGATG ACGGTCGATC GCCAGCGCGT CGAAGCGCTG
ACCGGCGATA CCGGCGTGCA GCTGCGCTAC CCGCTGCTGA TCGGCGGCGG GATCTACAGC
CCGTTCGTCA ACCTTACCGC CGCGCATGAT TTCATCGGCG AGGGCCGCAC CATCACCACC
ATGCTGGTGT CGGCGCCGCT ATTGCCGATC CTGACCCCGG TTGCGGGCGA TGGCCGAACC
TATGGCAGGG TCGCTGCGGG TGTCTCGGCG TTGGTGTCCG GCAATGTCTC GGCGACGCTG
ACGGTCGGGT CGACCTTCGC GCGCAGCGGC GGCGACGATC TGGCGCTCAG CGGTGGCGTC
AAGCTGGCGT TCTAG
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| Protein sequence | MLSITAIRVV RRRGDRRGGV TTPRVKRAAA ATAVAVLSLG ATLGSAQAQF TRVYGFGDSY
ADTGTAPGGA FRLGHEPCVY PGVCSFTGST TFVQTLQSLY AAPEMVNYAI GGARTSNSNT
LGFLGSNYGF PYELARLAHD GVRFTDRDLI ALSIGGNDSS QLVNDVGAAR TLGTQAAARA
VNGTGVGTIT GTFDGVTYND VATYGVQQLV AAGARNIAWF SAGNSKYFPE PEGGAAVQAP
ARDAFAHTYY QELQTLLRPM AQAGVRIFLF NYEILQRRIF ENAAIYGFSA VPGCEANGGG
SIPQVTGCFY ENSVHPTGAA MALIASYMAN QIDAPTTVVP QGSISTALAT GFTGSVFGRL
DAQRSLAPFG LGSALAYAGP PKAAPAANPA DRWSIYGAAS YANGSRDRQF YGSGYDYNSV
GGIFGAEYRL DQNWRVGGVF GYSQPDVELG VQNARERIDA YQFAGYASYA DAHWFADGLL
GYGRHDFALQ RQGIIDTIRG NTRADVFTVA GKAGYLFDVG QLRVGPLASL TYSNAQIDGY
TETGDVLLTM TVDRQRVEAL TGDTGVQLRY PLLIGGGIYS PFVNLTAAHD FIGEGRTITT
MLVSAPLLPI LTPVAGDGRT YGRVAAGVSA LVSGNVSATL TVGSTFARSG GDDLALSGGV
KLAF
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