| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4434 |
|---|
| Symbol | |
|---|
| ID | 3970377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 4941892 |
|---|
| End bp | 4943082 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637927545 |
|---|
| Product | phosphonate metabolism PhnM |
|---|
| Protein accession | YP_534276 |
|---|
| Protein GI | 90425906 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3454] Metal-dependent hydrolase involved in phosphonate metabolism |
|---|
| TIGRFAM ID | [TIGR02318] phosphonate metabolism protein PhnM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAT TGAGCATCGA AGGCGGCAGC GTGCTGCTGG GCGATCAATT CCACGATGTC
AGCGTCAAAC TCGGCGACGG CCGGATCGCG GCCATCGACC TGAAGGCCGC CGCCGGCGCG
ACGCTCGACG CGCGCGGGCT GAAGCTGTTG CCCGGCATCG TCGATATCCA CGGCGACGCC
TTCGAGCGGC AGATGATGCC GCGGCCGGGC GTCGATTTCC CGATCGACAT TGCGCTGTGC
GAAAGCGACC GCCAGGCGAT CGGCAACGGC ATCACCACGG TGTTTCACGC CGCGACCTGG
TCGTGGGAGC CGGGCTTGCG CAGCGGCGCC AACGCCGAGC GGCTGCTCAA CGCGATCGAG
ACGCTGCGGC CACAGCTCGC CGCCGACACC CGCTTCCACC TGCGCCATGA GACCTACAAT
CTCGACGCCG AACACACTAT CAAGCATTGG ATCGCCGCCG GCCGGATCGA TCTGTTGGCG
TTCAACGATC ACACCGAGTC CACCGTCGCG GCTCTCGACA AGCCGGCCAA GCGCAACCGC
ATGGTGGAGC GCTCCGGCGT CAGCCATGAC GAGTTCGACA GGATCGTCTC GCACGTCGTG
GCGCGGCATC ACGAGGTGCC TGGCTCGATC GCACGGCTGG CGGAAACCGC GCGCGCGGTG
CAGCTGAAGA TGCTGTCGCA TGACGACGAC ACCCCCGAGC TGCGGCAAGC GTTTCGCGAC
CAGGGCGTGG CGATCGCCGA ATTCCCGGTC AACGAACCGA CCGCGCGGGC GGCGATCGAC
GGCGGCGACG TCACCGTGTT CGGCGCGCCG AATGTGGTGC GCGGCGGCAG CCACACCGGC
TGGACCAAGG CCGCCGACAT GATCGCCAAC GGGCTGTGCT CGATTCTGGC GTCGGATTAC
TACTATCCGG CACCGCTGTT GGCGGCGTTC CGGCTGGTCG CCGACGGCGT TCTGCCGTTG
GCCGAGGCGT GGACGCTGGT GTCGTCGGCG CCGGCCAAGG CGGTCGGCCT CACCGACCGC
GGCGTGATCG CCGAAGGCCG CCGCGCCGAT CTGATCCTGG TCGACGACGC GGTGGCGCTG
CGGCCGCGGC TGGTCGCGGC GATCGCCGCC GGCCGGCTGG TCTATCTCCG CGAGGCCGAA
CGTCTCAGCG GCGAACAGCC GGCGTTGCGC ACGGCGTTTG CAGCGGCGTG A
|
|---|
| Protein sequence | MSALSIEGGS VLLGDQFHDV SVKLGDGRIA AIDLKAAAGA TLDARGLKLL PGIVDIHGDA
FERQMMPRPG VDFPIDIALC ESDRQAIGNG ITTVFHAATW SWEPGLRSGA NAERLLNAIE
TLRPQLAADT RFHLRHETYN LDAEHTIKHW IAAGRIDLLA FNDHTESTVA ALDKPAKRNR
MVERSGVSHD EFDRIVSHVV ARHHEVPGSI ARLAETARAV QLKMLSHDDD TPELRQAFRD
QGVAIAEFPV NEPTARAAID GGDVTVFGAP NVVRGGSHTG WTKAADMIAN GLCSILASDY
YYPAPLLAAF RLVADGVLPL AEAWTLVSSA PAKAVGLTDR GVIAEGRRAD LILVDDAVAL
RPRLVAAIAA GRLVYLREAE RLSGEQPALR TAFAAA
|
|---|
| |