| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4067 |
|---|
| Symbol | |
|---|
| ID | 3973348 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 4518618 |
|---|
| End bp | 4519904 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637927171 |
|---|
| Product | NADH dehydrogenase (quinone) |
|---|
| Protein accession | YP_533912 |
|---|
| Protein GI | 90425542 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0902793 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGA CCCCGCTGAC CGGCCGCGCC CAACCCGGCC GCGAACCGCA TCGCTTCGCC
GAATGGCAGC GGCTCGGCGG CTACGACGCG CTGCGCGGCG CGCTGCAACG GCATTCGCCC
GACGCGCTGG TGACGATCGT CGAGGATTCC GGGCTGCGCG GCCGCGGCGG CGCCGGCTTC
CTCACCGGCA CCAAATGGCG GCTGATGCGC AAGGCCGCCG AAGCCGCCGG CGACGGGCCG
CGCTATCTCT GCGTCAATGG CGACGAGATG GAGCCGGGCT CGTTCAAGGA TCGCCTTTTG
ATGGAGGCGC TGCCGCATCA ACTGATCGAA GGCGCGATGC TCGCGGCCTA CGCGATCGGC
GCCACCGAAG TGATCATCCT GGTGCGCGAC GCCTATCGCG CCGCGGCGGT GGCGCTCACC
CGCGCCATCA CCGAGGCGGA ATCCGCGGGT CTGCTCGGCC GCAATATTCT GGGCTCCGGC
TTCGGCCTGA AGATGCGGCT GCATACCAGC GCCGGACGCT ACATCGTCGG CGAGGAGACC
GCGCTGATCG CCGCGATCGA GGGCGAACGC CCGGTGCCGC GGCATCGGCC GCCTTATCCG
GCGCAGAGCG GGCTGTGGGG CCGGCCGACC ACCGTCAACA ATGTCGAGAC GCTGTCGGCG
GTCCCTCACA TCGTGCAGAA CGGCGCGGAG TGGTTTCAGG GATTGTCGCG GACGGCCGAA
GGCGGCACCA AGCTCTATGG CATCTCCGGG CGGGTCGCCC GCCCGCAACT GATCGAAGCG
CCGATGGGTA CGCCGGCCGG CGAACTGATC GAGATGGCCG GCGGGATTCG AGACGGCCGC
AAGCTGCTGG CGTTTCAGCC CGGCGGCGGC GCCACGGCGT TTCTGCAGGA AGCCGAGCTC
GACGTGCCGA TGGATTTCGC CCACGTCAAG AAGGCCGGCA GTTCGCTCGG CACCGGCGCC
GTGATCGTGC TCGATGATCA GAGCTGCCCG GTCGCGGCGA TCGGCCGCCA TGCAAGATTT
TACGCGCGGG AGAGCTGCGG GCTGTGCACG CCGTGCCGCG ATGGCTTGCC ATGGGTGGCG
AAGCTGCTCG ACGCGCTGGA GGCCGGCCAC GGCAAGCCTG AGGACATCGA CCTGTTGCAT
ATGCATGTGG AGCTGGCTGG GCCGTCCGGG CGCAGCTTCT GCGACCTGAT GGCGGGTGCG
ATGACGCCGG TGAAAAGCGG CTTGGAGCGG TTCGGCGATA TCTTCGCAGC ACACCTCAAC
GGCCATTGCC CGGTGCGCCG ATCATGA
|
|---|
| Protein sequence | MSETPLTGRA QPGREPHRFA EWQRLGGYDA LRGALQRHSP DALVTIVEDS GLRGRGGAGF
LTGTKWRLMR KAAEAAGDGP RYLCVNGDEM EPGSFKDRLL MEALPHQLIE GAMLAAYAIG
ATEVIILVRD AYRAAAVALT RAITEAESAG LLGRNILGSG FGLKMRLHTS AGRYIVGEET
ALIAAIEGER PVPRHRPPYP AQSGLWGRPT TVNNVETLSA VPHIVQNGAE WFQGLSRTAE
GGTKLYGISG RVARPQLIEA PMGTPAGELI EMAGGIRDGR KLLAFQPGGG ATAFLQEAEL
DVPMDFAHVK KAGSSLGTGA VIVLDDQSCP VAAIGRHARF YARESCGLCT PCRDGLPWVA
KLLDALEAGH GKPEDIDLLH MHVELAGPSG RSFCDLMAGA MTPVKSGLER FGDIFAAHLN
GHCPVRRS
|
|---|
| |