Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3771 |
Symbol | |
ID | 3969364 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 4191116 |
End bp | 4192909 |
Gene Length | 1794 bp |
Protein Length | 597 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637926881 |
Product | nickel-dependent hydrogenase, large subunit |
Protein accession | YP_533625 |
Protein GI | 90425255 |
COG category | [C] Energy production and conversion |
COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.292608 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.910106 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAACA TCACCACGCC GAATGGCTTC AAACTCGACA ATGCCGGCCG CCGCGTCGTC GTCGATCCGG TGACCCGGAT CGAGGGACAT TTGCGCGTCG AGGTCAATGT CGACGCCAAC AACGTGATCC GCAACGCGGT GTCGACCGGC ACGATGTGGC GCGGCATCGA AGTGATTTTG CGCGGCCGCG ATCCGCGCGA CGCCTGGGCC TTCACCGAAC GGATCTGCGG CGTCTGCACC GGCACCCACG CCTTGACCTC GGTGCGCGCG GTGGAAAACG CGCTCGACAT CAAGATCCCG GAAAACGCCA ACACCATCCG CAACATCATG CAGCTGACGC TGCAGGTGCA CGACCACATC GTGCATTTCT ATCATCTGCA CGCGCTGGAC TGGGTCGACA TCGTCTCGGC ACTGTCCGCC GATCCGAAGG CGACCTCGAC GCTGGCGCAG AGCATTTCGA ACTGGCCGCT GTCGAGTCCG GGCTACTTCA AGGATCTGCA GACCCGGCTG AAGAAGTTCG TCGAGTCGGG GCAGCTCGGG CCGTTCAAGA ACGGCTATTG GGGCCATCCG GCCTACAAGT TGCCGCCGGA AGCCAATCTG ATGGCGGTGG CGCATTATCT GGAGGCGCTC GACTTCCAGA AGGACATGGT GAAGATCCAC ACCGTCTATG GCGGCAAGAA CCCGCATCCG AACTGGCTGG TCGGCGGCGT GCCCTGCGCG ATCAATGTCG ACGGCGTGGG CGCGGTCGGT GCCGTCAACA TGGAGCGGCT CAACCTGGTG TCGTCGATCA TCGACCAGAT GGTGACCTTC ACCGAGCAGG TCTATCTGCC GGACTTGCAG GCGATCGCCT CGTTCTACAA GGATTGGACC TTCGGCGGCG GGCTGTCGTC GACATCGGTG ATGAGCTACG GCGACATTCC GGAATACGCC AACGACTATT CGGCGGCGTC GCTGAAAATG CCGCGCGGCG TGATCCTCAA CGGCAATCTC AACGAGGTGC TACCGGTCGA TCTCGCCGAC CCCTCGCAGG TGCAGGAGTT CGTCACCCAC TCTTGGTACA AATATCCCGA CGAGACCAAG GGCCTGCATC CGTGGGACGG TGTCACCGTT CCGCATTATG AGCTGGGGCC GAAGTCGAAG GGCACCAAGA CCCGGATCGA GGCGGTCGAC GAGGAGGCGA AGTATTCCTG GATCAAGTCG CCGCGCTGGA AAGGCAACGC GGTCGAGGTC GGGCCGTTGG CGCGCTACAT CGTCGGCTAC GCGCAGAACA AGCCGGAGTT CAAGGAGCCG ACCGAAAAGC TCCTCAAGGA CCTCGGCCTG CCGGTGACCG CGCTGTTCTC CACGCTCGGC CGCACCGCGG CGCGCGCGCT GGAGGCGCAA TGGGCGGCGC ATCAGCTGCG CTACTTCCAG AACAAGCTGA TGGCGTCGCT GAAGGCCGGC GACAGCGCCA CCGCCAATGT CGAGAAGTGG AGCCCGGAGA CCTGGCCGAA GGAGGTCAAG GGCGTCGGCT TCACCGAGGC GCCGCGCGGC GCGCTCGGCC ACTGGATCAA GATCAAGGAT GGCAAGATCG ACAACTACCA GGCGGTGGTG CCGACCACCT GGAACGGCAG TCCGCGCGAT CCCAAGGGCG GCATCGGCGC CTTCGAGGCG AGCTTGCTCG AAACCCCGAT GGCCGATCCG AACCAGCCTT TGGAGATCCT GCGCACGCTG CATTCGTTCG ACCCGTGTCT GGCCTGCTCA ACTCATGTCT TGAGCGAGGA CGGCCAGGAA ATGAGCCGGG TGACGGTGCG CTGA
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Protein sequence | MTNITTPNGF KLDNAGRRVV VDPVTRIEGH LRVEVNVDAN NVIRNAVSTG TMWRGIEVIL RGRDPRDAWA FTERICGVCT GTHALTSVRA VENALDIKIP ENANTIRNIM QLTLQVHDHI VHFYHLHALD WVDIVSALSA DPKATSTLAQ SISNWPLSSP GYFKDLQTRL KKFVESGQLG PFKNGYWGHP AYKLPPEANL MAVAHYLEAL DFQKDMVKIH TVYGGKNPHP NWLVGGVPCA INVDGVGAVG AVNMERLNLV SSIIDQMVTF TEQVYLPDLQ AIASFYKDWT FGGGLSSTSV MSYGDIPEYA NDYSAASLKM PRGVILNGNL NEVLPVDLAD PSQVQEFVTH SWYKYPDETK GLHPWDGVTV PHYELGPKSK GTKTRIEAVD EEAKYSWIKS PRWKGNAVEV GPLARYIVGY AQNKPEFKEP TEKLLKDLGL PVTALFSTLG RTAARALEAQ WAAHQLRYFQ NKLMASLKAG DSATANVEKW SPETWPKEVK GVGFTEAPRG ALGHWIKIKD GKIDNYQAVV PTTWNGSPRD PKGGIGAFEA SLLETPMADP NQPLEILRTL HSFDPCLACS THVLSEDGQE MSRVTVR
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