Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3735 |
Symbol | metH |
ID | 3971480 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 4157909 |
End bp | 4161769 |
Gene Length | 3861 bp |
Protein Length | 1286 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637926845 |
Product | B12-dependent methionine synthase |
Protein accession | YP_533589 |
Protein GI | 90425219 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain [COG1410] Methionine synthase I, cobalamin-binding domain |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.391435 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCACTC CGATCTCAGC CAAGCGCACC GCCCTGCTCG CGCTCGCCCG CGAGCGCATC CTGGTGCTCG ACGGCGCCAT GGGCACGATG ATCCAGCAGC TGCAATTCGA CGAGGCGGCG TTCCGCGGCG CGCGCTATCA TAACTTCCAC CGCGACCTGC GCGGCAACAA CGATTTGTTG ATCCTGACCC AGCCGCAGGC GATCGAAAAC ATCCACGCGC AATATCTGCG CGCCGGCGCT GACATCGTCG CCACCAACAC GTTTTCGTCG ACCTCGATCG CGCAGGCCGA TTACGATCTT TCCGACATCG CCTATGAGAT GAGCCGCGAA GGCGCGCGGC TGGCGCGCAA CGCCGCGACG CTGGTCGAGG CCGAGGACGG CAAGCCGCGC TTCGTCGCGG GCTCGATCGG CCCGACCAAC CGCACCGCCT CGATCTCGCC GGACGTCGGC AATCCCGGCT ACCGCGCCGT CACCTTCGAC GATCTGCGGC TGGCCTATGC CGAGCAGATC AACGGGCTGT TGGACGGCGG CGCCGATCTT TTGCTGGTCG AGACCATCTT CGATACGCTG AACGCCAAGG CGGCGCTCTA CGCCATCGCC GAAATCGCCG AGGCGCGCGG CATCGACGTG CCGGTGATGA TCTCCGGCAC CATCACCGAC AAATCCGGCC GACTGCTGTC GGGGCAAATG CCGGAAGCGT TCTGGAATTC GGTGCGCCAT GCGGGGCCGA TCACCATCGG CTTCAACTGC GCGCTCGGCG CCGAGGACAT GCGCGGCCAC ATCGCCGACA TCGGCAGGGT CGCCGACACG CTGATCTGCG CCTATCCGAA CGCCGGCCTG CCCAACGAAT TCGGCCAGTA CGACGAGACC CCGGAATACA TGGCGCGGCT GGTCGGCGAA TTCGCCCGCG ACGGCTTGGT CAACATCGTC GGCGGCTGCT GCGGCACCAC GCCGGACCAT ATCGCGGCGA TCGCGCAGGC GGTCGCCCCC TACAAGCCGC GCATCGTGCC AACGATCGAG CCGCGGCTGC GATTGAGCGG CCTCGAGCCG TTCGAACTCA CCGCCGACAT TCCCTTCGTC AATGTTGGCG AACGCACCAA CGTCACCGGC TCGGCGAAAT TCCGCAAGCT GATCACCGCC GGCGATTACG ACGCAGCATT GCAGGTGGCC CGCGACCAGG TCGAGAACGG CGCGCAGATC ATCGACGTCA ATATGGACGA AGGCCTGCTC GACTCCGAAG CCGCGATGGT GACCTTCCTC AATCTGGTCG CCGCCGAACC CGACATCGCC CGCGTCCCGG TGATGGTCGA CTCGTCAAAG TTCGCGGTGA TCGAAGCCGG GTTGAAATGC CTGCAGGGCA AGCCGGTGGT GAATTCGATC TCGATGAAGG AAGGCGAAGC CAAATTCATC CACGAGGCGC AGATCGCGCG GCGGCACGGC GCCGCGGTGG TGGTGATGGC GTTCGACGAA CAGGGCCAGG CTGACACCTA TGCGCGCAAG ACCGCGATCT GCAAGCGCGC CTACGACATC CTGGTCGGGC AGCTGAATTT CCCGCCGGAA GATATCATCT TCGATCCCAA CGTATTCGCG ATCGCCACCG GGCTCGAAGA GCACAACAAT TACGGCGTCG ATTTCATCGA AGCGACCCGC TGGATCCGCC AAAACCTGCC GCACGCGCAT ATTTCCGGCG GCGTCTCTAA TCTGTCGTTT TCGTTCCGCG GCAACGAGCC GGTGCGCGAG GCGATGCACT CGGTGTTCCT GTATCACGCC ATCAAGGCCG GCATGGACAT GGGCATCGTC AACGCCGGAC AGATGATCGT CTATGACGAC ATCGATCCCG AACTGCGCCA AGTCTGCGAG GACGTCATCC TCAACCGCGA TCCCGGCGCC TCGGAGCGGC TGTTGCAGCT CGCCGAAAAA TATCGCGGCA AGGAAAAGCA GACCAAGGAG CAGGATCTCG CCTGGCGCGA CTGGCCGGTG GAGAAGCGGC TCAGCCACGC GCTGGTGCAC GGCATCACCG AATATATCGA GGCCGACACC GAGGCCGCGC GGCTCACCGT GGCGCGACCG CTGCACGTCA TCGAAGGCCC GCTGATGGCC GGCATGAACG TGGTCGGCGA TCTGTTCGGC GACGGCAAGA TGTTTCTGCC GCAGGTGGTG AAATCCGCCC GCGTCATGAA GCAGGCGGTG GCCTATCTGA TGCCGTTCAT GGAGAAGGAA AAGGCCGACA ATCTGGCCGC CGGCATCGCC GGCGACGGCC GCAAGAACGC CGGCAAGATC GTCATCGCCA CGGTAAAGGG CGACGTCCAC GACATCGGCA AGAACATCGT CGCGATCGTG CTGCAGTGTA ACAATTTCGA GGTGATCGAT CTCGGCGTCA TGGTGCCGGC GGCGAAGATC ATCGAGGCCG CCAAGCGCGA GGGCGCCGAC ATCATCGGGC TCTCCGGGCT GATCACGCCG TCGCTCGACG AGATGAGCTT CCTTGCTTCC GAAATGCAGC GCAACGGCCT GACCATTCCG CTGCTGATCG GCGGCGCCAC CACCAGCCGG GTGCACACCG CGGTGAAGAT CGACGCCAAC TATCCCGATG GCGCGGTGGT GCACGTCCAC GACGCCAGCC GCGCGGTCGG CGTCGCCTCC TCGCTGCTGG CGCCGGATCG CCGCGACGCC TATGCCGCCG AGATCCGTGC CGAATATCAG AAGATTTCCG CAGCGCACGC CCGCGCCCAG GCCGACAAGA AGCGGCTGAA GCTCAGCGAT GCGCGCGGCA ACGCCGTCAA GCTCGACTGG ACGAAGGCCA AGCCTGCGAA GCCGAGCTTC CTCGGGGTGA AAAGCTTCAG CAACTACCCG CTCGCCGAAC TGGTCGACTA CATCGATTGG ACGCCGTTCT TCCAGGCCTG GGAATTGGCC GGACGTTACC CCGCGATTCT CGACGACGCC GTGGTCGGCG ACGCCGCGCG CGCGCTTTAC GCCGATGCGA GAGCGATGCT GCAGCGGATC GTCGCCGAGA ACTGGTTCAC CGCCAAGGCC GCGATCGGGT TCTGGCCGGC CAATGCGGTC GGCGACGACA TCATCGTCTA CGCCGACGAC ACGAGACAGA GTTCGATCAC CACGCTGCAC ACACTGCGCC AACAGTTGGA GAAGCGCGAA GGCCGCTTCA ACGCAGCACT TGCGGACTTC GTCGCGCCGA CCGCCTCGGG CGTCGCCGAC TACATCGGCG CCTTCGTGGT CACCGCCGGG ATCGGCGAGG ACGTCATCGC CGACAAGTTC AAGACCGCCA ACGACGACTA CTCCTCGATC CTTTGCAAGG CGCTGGCGGA TCGGCTCGCC GAAGCCTTCG CCGAGCGGAT GCATCAGCGG GTGCGCGCCG AATTGTGGGG CACCTCGCCC GACGAAGCGT TGACGCCAAA TGACCTGATC GCGGAAAAAT ATCGCGGAAT CCGCCCGGCG CCGGGCTATC CGGCGCAGCC CGATCACACC GAGAAGGCCA CCCTATTTGC GCTGCTCGAC GCCGAGGTCA ATGCCGGGGT GACGCTGACC GAGAGCTTCG CGATGTGGCC GGGATCTTCG GTCTCCGGGT TGTATTTCGG CCATCCGGAA AGCTTCTACT TCGGCGTCGG CAAGATCGAG CGCGACCAGG TGCAGGACTA CGCGGTGCGA AAAGGCTGGA GCGTGGCCGA GGCCGAGCGC TGGCTGGCTC CGGTCTTGAA CTACATCCCG GAGCGCGCCG CGACGCCGCC GCTGGCGCCG AGCCAGGCGC CCGAGGTTGC AACCGACGTC GCCGACGTGG CCTCGCATCC TTTGGGCTGC GGCTGCGCCT TCCATCTGCG CTATCGCGAC AAGGCCGCGC GGGCGAGCTA G
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Protein sequence | MTTPISAKRT ALLALARERI LVLDGAMGTM IQQLQFDEAA FRGARYHNFH RDLRGNNDLL ILTQPQAIEN IHAQYLRAGA DIVATNTFSS TSIAQADYDL SDIAYEMSRE GARLARNAAT LVEAEDGKPR FVAGSIGPTN RTASISPDVG NPGYRAVTFD DLRLAYAEQI NGLLDGGADL LLVETIFDTL NAKAALYAIA EIAEARGIDV PVMISGTITD KSGRLLSGQM PEAFWNSVRH AGPITIGFNC ALGAEDMRGH IADIGRVADT LICAYPNAGL PNEFGQYDET PEYMARLVGE FARDGLVNIV GGCCGTTPDH IAAIAQAVAP YKPRIVPTIE PRLRLSGLEP FELTADIPFV NVGERTNVTG SAKFRKLITA GDYDAALQVA RDQVENGAQI IDVNMDEGLL DSEAAMVTFL NLVAAEPDIA RVPVMVDSSK FAVIEAGLKC LQGKPVVNSI SMKEGEAKFI HEAQIARRHG AAVVVMAFDE QGQADTYARK TAICKRAYDI LVGQLNFPPE DIIFDPNVFA IATGLEEHNN YGVDFIEATR WIRQNLPHAH ISGGVSNLSF SFRGNEPVRE AMHSVFLYHA IKAGMDMGIV NAGQMIVYDD IDPELRQVCE DVILNRDPGA SERLLQLAEK YRGKEKQTKE QDLAWRDWPV EKRLSHALVH GITEYIEADT EAARLTVARP LHVIEGPLMA GMNVVGDLFG DGKMFLPQVV KSARVMKQAV AYLMPFMEKE KADNLAAGIA GDGRKNAGKI VIATVKGDVH DIGKNIVAIV LQCNNFEVID LGVMVPAAKI IEAAKREGAD IIGLSGLITP SLDEMSFLAS EMQRNGLTIP LLIGGATTSR VHTAVKIDAN YPDGAVVHVH DASRAVGVAS SLLAPDRRDA YAAEIRAEYQ KISAAHARAQ ADKKRLKLSD ARGNAVKLDW TKAKPAKPSF LGVKSFSNYP LAELVDYIDW TPFFQAWELA GRYPAILDDA VVGDAARALY ADARAMLQRI VAENWFTAKA AIGFWPANAV GDDIIVYADD TRQSSITTLH TLRQQLEKRE GRFNAALADF VAPTASGVAD YIGAFVVTAG IGEDVIADKF KTANDDYSSI LCKALADRLA EAFAERMHQR VRAELWGTSP DEALTPNDLI AEKYRGIRPA PGYPAQPDHT EKATLFALLD AEVNAGVTLT ESFAMWPGSS VSGLYFGHPE SFYFGVGKIE RDQVQDYAVR KGWSVAEAER WLAPVLNYIP ERAATPPLAP SQAPEVATDV ADVASHPLGC GCAFHLRYRD KAARAS
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