Gene RPC_3735 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_3735 
SymbolmetH 
ID3971480 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp4157909 
End bp4161769 
Gene Length3861 bp 
Protein Length1286 aa 
Translation table11 
GC content65% 
IMG OID637926845 
ProductB12-dependent methionine synthase 
Protein accessionYP_533589 
Protein GI90425219 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain 
TIGRFAM ID[TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.391435 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCACTC CGATCTCAGC CAAGCGCACC GCCCTGCTCG CGCTCGCCCG CGAGCGCATC 
CTGGTGCTCG ACGGCGCCAT GGGCACGATG ATCCAGCAGC TGCAATTCGA CGAGGCGGCG
TTCCGCGGCG CGCGCTATCA TAACTTCCAC CGCGACCTGC GCGGCAACAA CGATTTGTTG
ATCCTGACCC AGCCGCAGGC GATCGAAAAC ATCCACGCGC AATATCTGCG CGCCGGCGCT
GACATCGTCG CCACCAACAC GTTTTCGTCG ACCTCGATCG CGCAGGCCGA TTACGATCTT
TCCGACATCG CCTATGAGAT GAGCCGCGAA GGCGCGCGGC TGGCGCGCAA CGCCGCGACG
CTGGTCGAGG CCGAGGACGG CAAGCCGCGC TTCGTCGCGG GCTCGATCGG CCCGACCAAC
CGCACCGCCT CGATCTCGCC GGACGTCGGC AATCCCGGCT ACCGCGCCGT CACCTTCGAC
GATCTGCGGC TGGCCTATGC CGAGCAGATC AACGGGCTGT TGGACGGCGG CGCCGATCTT
TTGCTGGTCG AGACCATCTT CGATACGCTG AACGCCAAGG CGGCGCTCTA CGCCATCGCC
GAAATCGCCG AGGCGCGCGG CATCGACGTG CCGGTGATGA TCTCCGGCAC CATCACCGAC
AAATCCGGCC GACTGCTGTC GGGGCAAATG CCGGAAGCGT TCTGGAATTC GGTGCGCCAT
GCGGGGCCGA TCACCATCGG CTTCAACTGC GCGCTCGGCG CCGAGGACAT GCGCGGCCAC
ATCGCCGACA TCGGCAGGGT CGCCGACACG CTGATCTGCG CCTATCCGAA CGCCGGCCTG
CCCAACGAAT TCGGCCAGTA CGACGAGACC CCGGAATACA TGGCGCGGCT GGTCGGCGAA
TTCGCCCGCG ACGGCTTGGT CAACATCGTC GGCGGCTGCT GCGGCACCAC GCCGGACCAT
ATCGCGGCGA TCGCGCAGGC GGTCGCCCCC TACAAGCCGC GCATCGTGCC AACGATCGAG
CCGCGGCTGC GATTGAGCGG CCTCGAGCCG TTCGAACTCA CCGCCGACAT TCCCTTCGTC
AATGTTGGCG AACGCACCAA CGTCACCGGC TCGGCGAAAT TCCGCAAGCT GATCACCGCC
GGCGATTACG ACGCAGCATT GCAGGTGGCC CGCGACCAGG TCGAGAACGG CGCGCAGATC
ATCGACGTCA ATATGGACGA AGGCCTGCTC GACTCCGAAG CCGCGATGGT GACCTTCCTC
AATCTGGTCG CCGCCGAACC CGACATCGCC CGCGTCCCGG TGATGGTCGA CTCGTCAAAG
TTCGCGGTGA TCGAAGCCGG GTTGAAATGC CTGCAGGGCA AGCCGGTGGT GAATTCGATC
TCGATGAAGG AAGGCGAAGC CAAATTCATC CACGAGGCGC AGATCGCGCG GCGGCACGGC
GCCGCGGTGG TGGTGATGGC GTTCGACGAA CAGGGCCAGG CTGACACCTA TGCGCGCAAG
ACCGCGATCT GCAAGCGCGC CTACGACATC CTGGTCGGGC AGCTGAATTT CCCGCCGGAA
GATATCATCT TCGATCCCAA CGTATTCGCG ATCGCCACCG GGCTCGAAGA GCACAACAAT
TACGGCGTCG ATTTCATCGA AGCGACCCGC TGGATCCGCC AAAACCTGCC GCACGCGCAT
ATTTCCGGCG GCGTCTCTAA TCTGTCGTTT TCGTTCCGCG GCAACGAGCC GGTGCGCGAG
GCGATGCACT CGGTGTTCCT GTATCACGCC ATCAAGGCCG GCATGGACAT GGGCATCGTC
AACGCCGGAC AGATGATCGT CTATGACGAC ATCGATCCCG AACTGCGCCA AGTCTGCGAG
GACGTCATCC TCAACCGCGA TCCCGGCGCC TCGGAGCGGC TGTTGCAGCT CGCCGAAAAA
TATCGCGGCA AGGAAAAGCA GACCAAGGAG CAGGATCTCG CCTGGCGCGA CTGGCCGGTG
GAGAAGCGGC TCAGCCACGC GCTGGTGCAC GGCATCACCG AATATATCGA GGCCGACACC
GAGGCCGCGC GGCTCACCGT GGCGCGACCG CTGCACGTCA TCGAAGGCCC GCTGATGGCC
GGCATGAACG TGGTCGGCGA TCTGTTCGGC GACGGCAAGA TGTTTCTGCC GCAGGTGGTG
AAATCCGCCC GCGTCATGAA GCAGGCGGTG GCCTATCTGA TGCCGTTCAT GGAGAAGGAA
AAGGCCGACA ATCTGGCCGC CGGCATCGCC GGCGACGGCC GCAAGAACGC CGGCAAGATC
GTCATCGCCA CGGTAAAGGG CGACGTCCAC GACATCGGCA AGAACATCGT CGCGATCGTG
CTGCAGTGTA ACAATTTCGA GGTGATCGAT CTCGGCGTCA TGGTGCCGGC GGCGAAGATC
ATCGAGGCCG CCAAGCGCGA GGGCGCCGAC ATCATCGGGC TCTCCGGGCT GATCACGCCG
TCGCTCGACG AGATGAGCTT CCTTGCTTCC GAAATGCAGC GCAACGGCCT GACCATTCCG
CTGCTGATCG GCGGCGCCAC CACCAGCCGG GTGCACACCG CGGTGAAGAT CGACGCCAAC
TATCCCGATG GCGCGGTGGT GCACGTCCAC GACGCCAGCC GCGCGGTCGG CGTCGCCTCC
TCGCTGCTGG CGCCGGATCG CCGCGACGCC TATGCCGCCG AGATCCGTGC CGAATATCAG
AAGATTTCCG CAGCGCACGC CCGCGCCCAG GCCGACAAGA AGCGGCTGAA GCTCAGCGAT
GCGCGCGGCA ACGCCGTCAA GCTCGACTGG ACGAAGGCCA AGCCTGCGAA GCCGAGCTTC
CTCGGGGTGA AAAGCTTCAG CAACTACCCG CTCGCCGAAC TGGTCGACTA CATCGATTGG
ACGCCGTTCT TCCAGGCCTG GGAATTGGCC GGACGTTACC CCGCGATTCT CGACGACGCC
GTGGTCGGCG ACGCCGCGCG CGCGCTTTAC GCCGATGCGA GAGCGATGCT GCAGCGGATC
GTCGCCGAGA ACTGGTTCAC CGCCAAGGCC GCGATCGGGT TCTGGCCGGC CAATGCGGTC
GGCGACGACA TCATCGTCTA CGCCGACGAC ACGAGACAGA GTTCGATCAC CACGCTGCAC
ACACTGCGCC AACAGTTGGA GAAGCGCGAA GGCCGCTTCA ACGCAGCACT TGCGGACTTC
GTCGCGCCGA CCGCCTCGGG CGTCGCCGAC TACATCGGCG CCTTCGTGGT CACCGCCGGG
ATCGGCGAGG ACGTCATCGC CGACAAGTTC AAGACCGCCA ACGACGACTA CTCCTCGATC
CTTTGCAAGG CGCTGGCGGA TCGGCTCGCC GAAGCCTTCG CCGAGCGGAT GCATCAGCGG
GTGCGCGCCG AATTGTGGGG CACCTCGCCC GACGAAGCGT TGACGCCAAA TGACCTGATC
GCGGAAAAAT ATCGCGGAAT CCGCCCGGCG CCGGGCTATC CGGCGCAGCC CGATCACACC
GAGAAGGCCA CCCTATTTGC GCTGCTCGAC GCCGAGGTCA ATGCCGGGGT GACGCTGACC
GAGAGCTTCG CGATGTGGCC GGGATCTTCG GTCTCCGGGT TGTATTTCGG CCATCCGGAA
AGCTTCTACT TCGGCGTCGG CAAGATCGAG CGCGACCAGG TGCAGGACTA CGCGGTGCGA
AAAGGCTGGA GCGTGGCCGA GGCCGAGCGC TGGCTGGCTC CGGTCTTGAA CTACATCCCG
GAGCGCGCCG CGACGCCGCC GCTGGCGCCG AGCCAGGCGC CCGAGGTTGC AACCGACGTC
GCCGACGTGG CCTCGCATCC TTTGGGCTGC GGCTGCGCCT TCCATCTGCG CTATCGCGAC
AAGGCCGCGC GGGCGAGCTA G
 
Protein sequence
MTTPISAKRT ALLALARERI LVLDGAMGTM IQQLQFDEAA FRGARYHNFH RDLRGNNDLL 
ILTQPQAIEN IHAQYLRAGA DIVATNTFSS TSIAQADYDL SDIAYEMSRE GARLARNAAT
LVEAEDGKPR FVAGSIGPTN RTASISPDVG NPGYRAVTFD DLRLAYAEQI NGLLDGGADL
LLVETIFDTL NAKAALYAIA EIAEARGIDV PVMISGTITD KSGRLLSGQM PEAFWNSVRH
AGPITIGFNC ALGAEDMRGH IADIGRVADT LICAYPNAGL PNEFGQYDET PEYMARLVGE
FARDGLVNIV GGCCGTTPDH IAAIAQAVAP YKPRIVPTIE PRLRLSGLEP FELTADIPFV
NVGERTNVTG SAKFRKLITA GDYDAALQVA RDQVENGAQI IDVNMDEGLL DSEAAMVTFL
NLVAAEPDIA RVPVMVDSSK FAVIEAGLKC LQGKPVVNSI SMKEGEAKFI HEAQIARRHG
AAVVVMAFDE QGQADTYARK TAICKRAYDI LVGQLNFPPE DIIFDPNVFA IATGLEEHNN
YGVDFIEATR WIRQNLPHAH ISGGVSNLSF SFRGNEPVRE AMHSVFLYHA IKAGMDMGIV
NAGQMIVYDD IDPELRQVCE DVILNRDPGA SERLLQLAEK YRGKEKQTKE QDLAWRDWPV
EKRLSHALVH GITEYIEADT EAARLTVARP LHVIEGPLMA GMNVVGDLFG DGKMFLPQVV
KSARVMKQAV AYLMPFMEKE KADNLAAGIA GDGRKNAGKI VIATVKGDVH DIGKNIVAIV
LQCNNFEVID LGVMVPAAKI IEAAKREGAD IIGLSGLITP SLDEMSFLAS EMQRNGLTIP
LLIGGATTSR VHTAVKIDAN YPDGAVVHVH DASRAVGVAS SLLAPDRRDA YAAEIRAEYQ
KISAAHARAQ ADKKRLKLSD ARGNAVKLDW TKAKPAKPSF LGVKSFSNYP LAELVDYIDW
TPFFQAWELA GRYPAILDDA VVGDAARALY ADARAMLQRI VAENWFTAKA AIGFWPANAV
GDDIIVYADD TRQSSITTLH TLRQQLEKRE GRFNAALADF VAPTASGVAD YIGAFVVTAG
IGEDVIADKF KTANDDYSSI LCKALADRLA EAFAERMHQR VRAELWGTSP DEALTPNDLI
AEKYRGIRPA PGYPAQPDHT EKATLFALLD AEVNAGVTLT ESFAMWPGSS VSGLYFGHPE
SFYFGVGKIE RDQVQDYAVR KGWSVAEAER WLAPVLNYIP ERAATPPLAP SQAPEVATDV
ADVASHPLGC GCAFHLRYRD KAARAS