| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3685 |
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| Symbol | ligD |
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| ID | 3971658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4108118 |
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| End bp | 4110853 |
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| Gene Length | 2736 bp |
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| Protein Length | 911 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637926795 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_533539 |
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| Protein GI | 162136026 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.865038 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGCTCG ACAACCTCAA GCTCTATCGC AAGAAGCGCG ACTTCGAGAA GACCGCGGAG
CCGAGCGGCG AAGCGAAAGT TGCGCCGTCG CAGCGTCGCC GCTTCGTGAT CCAGAAACAC
GATGCCACAA GGCTGCACTA CGATCTGCGG CTGGAATTCG ACGGCGTGTT CAAGTCGTGG
GCGGTGACGC GCGGGCCGTC GCTCGATCCG CACGACAAGC GGCTCGCGGT CGAGGTCGAG
GACCATCCGC TCGACTACGG CGATTTCGAA GGCACCATTC CGGAGGGCCA GTATGGCGGC
GGTACGGTGC AATTGTGGGA TCGCGGTTAC TGGGAGGCCG ACGATCCAGA GCGCGGCTTC
AAGACCGGCG ACCTCAAATT CACGCTGCAC GGCGAGAAGC TGCACGGCTC CTGGGTCTTG
GTGCGGATGC GCAACGATCG CAGCGGCGGC AAGCGTACCA ACTGGCTGCT GATCAAGCAC
CGCGACGACG ACGCCCGCGA AGGCGACGCC AACGACATCC TCGCACAGGA AGCCTCGGTG
GCGTCGGGCC GCGCGATGGA GGAGATCGCT GCCGGCAAGG GCCGCGCGCC GAAGCCGTTC
ATGGTGAAAG CCGCGCGGGC CAAGGCCGAC GCGGTGTGGG ATTCCAATCG CGGGCTTGCG
GCCGAGGCAC GCGGCGAGCG TGAAGCGCCA GCCAAGCGCC GCGCGGCGTC AAGACCGGCG
AAACAGGCCA AGGCGAAACA GGCCAAGGCA AAACCCGCCA AGCGCGCCAA GGCAAAGGCC
GTCGCCGCGA TGCCGGACTT CATCGCGCCG CAGCTCTGCA GCTCGGTGGA GCGACCGCCC
GGCGGCGCGG GCTGGGGCCA CGAGATCAAG TTCGACGGCT ACCGCGTGCA ATTGCGCGTC
GAAGGCGGCC AGGCCACGCT GAAGACCCGC AAGGGGCTGG ACTGGACGCG GAAATTCCGG
GCCATCGCCG ACCAGGCCGC GGCGCTGCCG GATGCCATCA TCGACACCGA GATCGTCGCG
CTCGACGCCG CCGGCGCGCC GGATTTCGCC GCCTTGCAGG CCGCATTGTC GGACGAGAAC
ACCGACAATC TGATCTGCTT TGCGTTCGAT CTGTTGTTCG CCGAGGGCGA GGATCTGCGC
GCCTTGCCGC TCAGCGAGCG CAAGCAGCGG CTTCAGGAGA TGCTCGAGCA GGCGCGCGGC
CGCCGTAAGC AGAGCGTGAT CCGCTATGTC GAGCACTTCG AAAGCGGCGG CGACGCGATC
CTGCAATCGG CCTGCAAGAT GTCGCTGGAA GGCATCGTCT CCAAGAAGCT CGACGCGCCG
TATCGCTCCG GCCGCAGCGA GAGCTGGACC AAGGCGAAGT GCCGCGCCGG CCACGAGGTG
GTGATCGGCG GCTGGAAGAG CAACGCCGGC AAATTCCGCT CGCTCATGGT CGGTGTCCAT
CGCGACGATC ATCTGGCCTA TGTCGGCATC GTCGGCACCG GCTTTGGTCA GGTCATGGTG
AAGCGCATCA TGCCGGCGCT GAAGGCGAAC GCCTCGAACG AGAATCCGTT CGGCGGCAAG
ACCGCGCCGA AGAAGACCGC AGAGGTGCAT TGGCTGAAGC CGGAGCTGGT GGCGGAGATC
GAATTCGCCG GCTTCACCGG CGCCGGCATG GTGCGCCAGG CGGCGTTCAA GGGCCTGCGC
CAGGACAAGC CGGCCGAGGA GGTCGAGGCG GAAACGCCGA AGAAAACCGC GGTGGCCGAA
CCGGGCCGCG GCAAGCGCGG CGGCAAAGCC AAGGCGGGCG CGGCAAAGCC AGCCGCGTCG
AAGCCCGCCG CGGCGAAGCC CGGCCATCCC GCGCAGGTGA TGGGCGTGCT GATCTCCAAG
CCCGACAAGC AATTGTGGCC CGACGCCAGC GATGGTGAGC CGGTGACCAA GCTCGATCTG
GCGCGCTACT TCGAGGCGGT CGGCGATTGG ATGCTGCCGC ACATCAAGGG CCGGCCGTGC
TCGATCGTGC GGGCGCCGGA CGGCATCAAA GGCGAACAGT TCTTCCAGCG CCACGCCATG
CCCGGCACCT CGAACCTGCT GGAGCTGGTC TCGGTCTCGG GCGACCGCAA GCCGTATCTG
CAGGTCGACC GCGTCGAGGG CCTCGCCGCG GTGGCGCAGA TCGGCGGGCT GGAGCTACAC
GCCTGGAATT GCGCGCCGGA TGCCCCCGAC GTCCCCGGCC GTTTCGTGTT CGACCTCGAT
CCGGCGCCTG ACGTGGCGTT TTCCGACGTG GTGGCCGCGG CGCGCGAGAT GCGCGAACGC
TTGACCGCGT TGGGCCTGGA GAGTTTCTGC AAGACCACCG GCGGCAAGGG GCTGCATGTG
GTGACGCCGC TCTCAAAGTC GAAAGACAAT GTCGACTGGA AACAGGCCAA GGCGTTCGCC
CAGGCGGTGT GCCGGCAGAT GGCCGAGGAT AGCCCCGAGC GCTATTTGCT CAACATGTCG
AAGAAGCTGC GCGAGGGAAA GATCTTCCTG GACTATCTGC GCAACGACCG CATGGCGACC
GCGGTGGCGG TGTTGTCGCC GCGGGCGCGC GACGGCGCCA CGGTGTCGAT GCCGTTGACT
TGGCCGCAGG TGAAGGGCGA TCTCGATCCG AAGCGATTCA CGTTGCGCAC GGTGCCCGGG
TTGTTGGCGA AATCCAAAGC CTGGGCGGGT TACGACGAAG CGGCCACCCC GCTGAAGGCT
GCCATCAAGC GGCTGGCCTC CAGCGGAACG ACGTAG
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| Protein sequence | MTLDNLKLYR KKRDFEKTAE PSGEAKVAPS QRRRFVIQKH DATRLHYDLR LEFDGVFKSW
AVTRGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPEGQYGG GTVQLWDRGY WEADDPERGF
KTGDLKFTLH GEKLHGSWVL VRMRNDRSGG KRTNWLLIKH RDDDAREGDA NDILAQEASV
ASGRAMEEIA AGKGRAPKPF MVKAARAKAD AVWDSNRGLA AEARGEREAP AKRRAASRPA
KQAKAKQAKA KPAKRAKAKA VAAMPDFIAP QLCSSVERPP GGAGWGHEIK FDGYRVQLRV
EGGQATLKTR KGLDWTRKFR AIADQAAALP DAIIDTEIVA LDAAGAPDFA ALQAALSDEN
TDNLICFAFD LLFAEGEDLR ALPLSERKQR LQEMLEQARG RRKQSVIRYV EHFESGGDAI
LQSACKMSLE GIVSKKLDAP YRSGRSESWT KAKCRAGHEV VIGGWKSNAG KFRSLMVGVH
RDDHLAYVGI VGTGFGQVMV KRIMPALKAN ASNENPFGGK TAPKKTAEVH WLKPELVAEI
EFAGFTGAGM VRQAAFKGLR QDKPAEEVEA ETPKKTAVAE PGRGKRGGKA KAGAAKPAAS
KPAAAKPGHP AQVMGVLISK PDKQLWPDAS DGEPVTKLDL ARYFEAVGDW MLPHIKGRPC
SIVRAPDGIK GEQFFQRHAM PGTSNLLELV SVSGDRKPYL QVDRVEGLAA VAQIGGLELH
AWNCAPDAPD VPGRFVFDLD PAPDVAFSDV VAAAREMRER LTALGLESFC KTTGGKGLHV
VTPLSKSKDN VDWKQAKAFA QAVCRQMAED SPERYLLNMS KKLREGKIFL DYLRNDRMAT
AVAVLSPRAR DGATVSMPLT WPQVKGDLDP KRFTLRTVPG LLAKSKAWAG YDEAATPLKA
AIKRLASSGT T
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