| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3597 |
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| Symbol | |
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| ID | 3971624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 3998723 |
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| End bp | 4000228 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637926707 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_533454 |
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| Protein GI | 90425084 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.482695 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCAATG CTTTTGTTCG CAGCATTGCG TTTCTCCCGC TGGCCGCCTC GCTCGGCGGA
TGCCTGGTCG GTCCTGACTA TGCCGGGCCG CCGCTTGCTG CGCCTCTGGC CGAGACCGGC
CAGGGCTTTC GACGTCTCGG CTCCAGCGCC CGCGCCCTGG AGCCGTCGGC GGACTGGTGG
CGGGCGATCC GCGATCCCAT GCTGACCGAA CTGATCGAAC GCGCCCTTGC GGACAGCCCC
TCGATCCAGA TCGTCGAGGC CAGGGTGCGT CAGGCACGGG CGAGTGCCAG GGAACAATAC
GCCAATCTGC TGCCGAGCGG GTCGGTGGCG GGCGCCTATC TGCATAATCG GATTCCGCTC
GGAGACGCCC GCCGCGGTCT CGAAAATGTT GCCGGTGGCC AAGCCATCGC CAGCCAGATT
CCCGATGGCA CCAACCTTGA TCTCTACGAT ACGAATTTCG ATGCAAGCTG GGAGATCGAT
ATCTTCGGCG GTCGCCAACG GGCTGCCGAA CAGGCCGTCG CGCAGGCCGA CGCCGCGGTC
GCGCGGTTTG CCGATGCCCA AGTCCAACTC GCGGCGCAGG TGGCCCAGAG CTATGTCGGT
TTGCGCGACG CGCAGCATCG GCTTGATCTG ACCTTGCAGT CGGTCAAGCT GCAACAGGAA
GCCATCGATC TGACCGCTCA GCGCCTGGGC GGCGGCACCA CCTCCGACCT TGATCTGGAG
CGCCTGCGCA CGCAGTTGGC CAGTACGGAG GCGATGGCGG ACCCGCTGCG CGCAACTATC
GACCGGAACC GCGGGCAGCT AGCCGTGCTG GTTGGGCTGG AGCCAGGCAC GCTCGACTCC
CAGCTGCGCC AGCCCAGGCC CGTTCCAGTC CCGCCACGGC CCCTCCGCAT TGGCGACCCC
GCCGGGATGC TGCGGCGGCG ACCCGATATC CGTGAAGCCG AACGAAATCT TGCCGCCACC
AATGCCCAGA TCGGACAGGC GGTAGCCGGC TATTTCCCTC GCGTCACGCT GCTCGGAAAT
GTCGGCTCAG TATCGACCTC CACCGCCGTG TTTGGGACTG CGGGCTCCTT GATCGGCAAT
GTCGGACCGA CGCTGCAGTG GAATGTGCTC GACTTCGGAC GGACGCTCGC GCGTATTCGG
CAGGCCGAAG CTGGCTCCGA CGCTGCTATC GCGCAGTATC AAAACACGGT CCTCACCGCG
CTGCAGGACG CTGAATCGTC GTTGTCACGG TTTAGTCACC AGCGCAGCCA AGTTGCAAAA
CTGGCGCGTG CCAGCGCGTC GGCCGACAAA GCCGCCGAGC TGATGCGACA GCGGAACCGA
GCCGGTACCG TCAGCGTCAT CGATCTGCTT GACGTCGAAC GGCAACGGCT CCAGACAGTT
CAAAGTCTGG CTCAAGCTCA GGCGCAGCTC ATGAACGACT ACATTGCGCT GCAAAAGAGC
TTGGGATTGG GATGGTCGGA CGCCCCCGCG CCCGAAGTCG CGTCATCGAA AGTTCCAGAT
CAATAA
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| Protein sequence | MVNAFVRSIA FLPLAASLGG CLVGPDYAGP PLAAPLAETG QGFRRLGSSA RALEPSADWW
RAIRDPMLTE LIERALADSP SIQIVEARVR QARASAREQY ANLLPSGSVA GAYLHNRIPL
GDARRGLENV AGGQAIASQI PDGTNLDLYD TNFDASWEID IFGGRQRAAE QAVAQADAAV
ARFADAQVQL AAQVAQSYVG LRDAQHRLDL TLQSVKLQQE AIDLTAQRLG GGTTSDLDLE
RLRTQLASTE AMADPLRATI DRNRGQLAVL VGLEPGTLDS QLRQPRPVPV PPRPLRIGDP
AGMLRRRPDI REAERNLAAT NAQIGQAVAG YFPRVTLLGN VGSVSTSTAV FGTAGSLIGN
VGPTLQWNVL DFGRTLARIR QAEAGSDAAI AQYQNTVLTA LQDAESSLSR FSHQRSQVAK
LARASASADK AAELMRQRNR AGTVSVIDLL DVERQRLQTV QSLAQAQAQL MNDYIALQKS
LGLGWSDAPA PEVASSKVPD Q
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