| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3578 |
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| Symbol | |
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| ID | 3972817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3980292 |
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| End bp | 3981368 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637926688 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_533435 |
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| Protein GI | 90425065 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.551051 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATGA AGGATTTCAA AAGGCCGTGG ATCGCCGCGT TGCTGGTCGT GCTGGTCGGC
GGCGTTGGCT ATTTTGTCTG GAAAGAGTTC GGCAGGAGCA GTCTTCCGCA AGGCATTGCC
AGCGGCAATG GCCGTATCGA AGCGACGGAG ATCGACATCG CCACCAAGAC GCCGGGGCGG
ATCCGGGAAA TCCTGGTCAA CGAAGGTGAT TTCGTGACGG CCGGCCAGGT GCTCGCCCGC
ATGGACACCG ATCAACTGGA AGCGCAGCGC CGACAGGCGA TCGCCCAGCA TCATCGGGCG
ATCGTCAGTG TTGACACGGC CAAGAGCCTC GTCGCGCAAA GAGCTGCCGA ACGCACCGCC
GCCATCGCAG TCATCGCCCA GCGTGAGGCG CAGCTCGATT CGATCCAGAG AAAGCTCGGG
CGCTCGGAGC GGCTGATCAC CACCAGTGCA GTGTCGCAGC AGGTTCTCGA TGACGATCGG
GCGAACGCCG AGGGCGCGAA GGCTGCCGTC GCAGCGGCTC AGGCGCAACT CGCGGCGGCC
GAGGCCGCCA TCAGCGCCGC CAATGCGCAG GTGATCGATG CCGGAGCATC CGTCGATGCG
ACCCAGGCGG CGGTCGAAAG CATCACCGTC GACATCAACG ATGCGATTCT GAAATCGCCT
CGCGACGGTC GCGTGCAATA CCGGGTCGTG CAGCCGGGTG AAGTGCTGTC CGCCGGCGGG
CGGGTGCTCA ATCTGGTTGA TCTCGGCGAT GTCTACATGA CGTTCTTCCT GCCGACCGCG
CAGGTCGGAC GGATACCGAT CGGAGCCGAG GTCCGGCTCG TGCTTGATGC CGTCCCGCAA
GTCGTCATTC CTGCCAAGGC GACCTTCGTG GCGGACGTCG CCCAGTTCAC GCCGAAGACC
GTCGAGACCG AAGAAGAGCG GCAGAAGCTG ATGTTCAGGG TGAAGGCGCA CATCTCGCCG
GCGCTGTTGA AGAAGTACAT CCAGCAGGTC AAAACTGGTC TTCCCGGCAT GGCCTATGTC
AAGTTTGATC CGAAGGCGGA ATGGCCGGCC AATCTCAACG GAACGCTGGC CCAATGA
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| Protein sequence | MTMKDFKRPW IAALLVVLVG GVGYFVWKEF GRSSLPQGIA SGNGRIEATE IDIATKTPGR
IREILVNEGD FVTAGQVLAR MDTDQLEAQR RQAIAQHHRA IVSVDTAKSL VAQRAAERTA
AIAVIAQREA QLDSIQRKLG RSERLITTSA VSQQVLDDDR ANAEGAKAAV AAAQAQLAAA
EAAISAANAQ VIDAGASVDA TQAAVESITV DINDAILKSP RDGRVQYRVV QPGEVLSAGG
RVLNLVDLGD VYMTFFLPTA QVGRIPIGAE VRLVLDAVPQ VVIPAKATFV ADVAQFTPKT
VETEEERQKL MFRVKAHISP ALLKKYIQQV KTGLPGMAYV KFDPKAEWPA NLNGTLAQ
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