Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3577 |
Symbol | |
ID | 3972816 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 3977503 |
End bp | 3980295 |
Gene Length | 2793 bp |
Protein Length | 930 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637926687 |
Product | ABC transporter related |
Protein accession | YP_533434 |
Protein GI | 90425064 |
COG category | [V] Defense mechanisms |
COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGTTC AAACGTCCGC CGCCGGGCTG GTCGGATCGA CTCAACCCGT CGTGCGTCTT GCCGCGGTCG ATCTTGCCTA TGGCGGCAAC CACGCGCTTC AGGGCATCAC GCTCGACGTG CCCGCCGGTT GCATGGTCGG CTTGATTGGC CCCGATGGCG TGGGAAAGTC CAGCCTGTTG TCGCTGATCG CAGGCGCGCG CGCCATCCAG ACTGGAACCG TGGCGGTGCT CGGCGGCGAT ATGGCCGATA CCGCCCATCG TCGCTCGGTT TGTCCGCGGA TCGCCTACAT GCCGCAGGGG CTCGGCAAGA ACCTCTATCC GACGCTGTCG GTATTCGACA ATGTCGATTT CTTCGGACGG TTGTTCGGCC AGGGCAAGCA GGAGCGGGAG CGTCGAATTC GTGAACTCCT GCAAAGCACC GGTCTGGCGG CTTTTGCAGA CCGCCCGGCG GGCAAGCTTT CGGGCGGCAT GAAGCAGAAG CTGGGCCTGT GTTGCGCCTT GATCCACGAT CCCGATCTTC TGATCCTGGA CGAGCCCACC ACCGGCGTTG ACCCGCTGTC ACGCCGCCAG TTCTGGGAAC TCATCGACAG AATTCGCGCC GAACGCGCCG GCATGAGCGT CATCGTTGCG ACGGCCTACA TGGAAGAGGC CGCGCGCTTC GATTGGCTGG CGGCGATGGA TGCTGGCCGG GTTCTCGCCA CCGGCGCTCC GGCCGAACTG CTGAGGCAGA CCGGCGCCGC CACGCTCGAC GGCGCCTTCA TCGCGCTGCT TCCGGAGCAG CAGCGCCGCG GCTACGCCGA GGTCGTGATT CCGCCGCGTC CCGTTGGCGT CGACGACGAC ATTGCCATCG AAGCCGAGCA CCTCACCATG CGGTTCGATG ATTTCACCGC CGTCGATGAC GTGAGTTTTC GGATCGGCCG TGGCGAGATC TTCGGATTTC TCGGCTCGAA CGGTTGCGGC AAGAGCACGA CCATGAAGAT GCTGACCGGA CTGCTGCCCG CCAGTGAAGG CACGGCCAAG CTATTTGGAC AGGAAGTCGA CCCGAACGAC ATGGCGGTGC GGCACCGCGT CGGTTACATG TCGCAAGCGT TCTCGCTGTA TTCCGAACTC ACCGTCCGCC AGAATCTCGA TCTTCATGCG CGGCTGTTCG GCATGCCTGT CGAAAAGATT GCGTCCCGCA TCGACGAGAT GGCGCAACGT TTCGATCTCG CAAACTATAT TGACTCGTTG CCGGATCCCC TGCCTTTGGG AATCCGCCAA CGGCTTTCCC TCGCCGTCGC GGTGATTCAT TCTCCTGCCA TCCTGATTCT CGACGAGCCC ACCTCCGGCG TCGACCCGAT CGCACGCGAC GGCTTCTGGC GAATCCTGTC CGACCTGTCG CGCACGGACA ACGTCACCAT CTTCATCTCG ACCCACTTCA TGAACGAGGC CGAGCGCTGC GACCGGATCT CGCTGATGCA TGCCGGCAAG GTGCTGGTCA GCGATTCGCC GAAAAACATT GTCGAAAGCC GTTCCGCCGA TTCGCTGGAA GCGGCCTTCA TTGCCTGCCT GGAAGCCGCG ATCGGTCAAA CTGCAAGCGT TGCACCGGAT ATCGGGCCGA TTGCCGCCGC CGCCGAGAAG AAAGCCGAAG CAGGCATGTC CGCAAAGCCA GGTGCGTGGC AGCGGTTGTT CGATCCGCGG CGCATGTTTG CCTACACCCG CCGCGAAGCC CTTGAACTGC GCCGCGATCC GATTCGCGCC ACGCTGGCCA CCATCGGCAG TGTCATTCTG ATGTTCGTGC TAGGTTATGG CATCAACATG GATATCGAGA ATCTGACATT CGCAGCGCTG GACCGCGACG ACACCACGAT CAGCCGCGAC TATATCCTGC AAATCGCCGG GTCGCGCTAC TTCAAGGAAA AGGCTCCGAT CACGGATTAT GCCGATCTCG ATCGACGCAT GCGCAGCGGT GAGCTGAGCC TGGCGATCGA AATTCCGCCG GGCTTCGGCC GCGACGTGGC GCGCGGGAAG AACGTCGAGA TCGGAGGCTG GATCGACGGC GCGATGCCCA CGCGGGCGGA AACCGCGCGC GGTTATGTTC AGGCGATGCA CGCAAGCTGG CTGACTCAGA AGGCGACAGA GCAGTATGGC GCCGCCGCCG TCGCCGGCAG CTACAACCTG GAGATCCGTT ACCGCTATAA TCCGGACGTC AAGAGTCTGG TGGCGATGGC GCCGGCGGTG ATCCCGCTGC TGCTGCTGTT GATACCGGCC ATGCTCGCTG TGCTCAGCGT GGTTCGCGAG AAGGAACTCG GATCAATCGT CAATTTCTAC ACCACGCCGG TGACGCGGCT CGAATTCTTG ATCGGCAAGC AATTGCCCTA TATCGCGCTC GGCATGCTGA ACTTCGTGTT GTTGACGGCC TTCGCCATTT TCGTGTTCCG CGTTCCGTTC ACCGGCAGCC TGCTGGCCCT TGCGAGCGGC GCACTGCTCT ACGTCACGAC GACGACCGCA ATGGGGTTGA TGATCTCGAT TTTCATGAGC AGCCAGATCG CCGCGATTTT TGGAACCGCT ATCATTACTT TGATTCCTGC GATGCAATAT TCAGGGCTGA TGGACCCGGT GTCCTCGCTG CAGGGCGCCG GCGCGTTGAT CGGGCGAATC TATCCCACGA CCTATTTCGT CAACATCACG CGCGGCACTT TCTCAAAGGC TCTGGATTTC GGCGACCTGT CCGGTTCGTT TGTGCCGCTG CTGATCATGA TCCCTGTGCT GCTGGGACTG GGTTCGATGC TCCTCAAGAA GCAGGCGAAT TGA
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Protein sequence | MTVQTSAAGL VGSTQPVVRL AAVDLAYGGN HALQGITLDV PAGCMVGLIG PDGVGKSSLL SLIAGARAIQ TGTVAVLGGD MADTAHRRSV CPRIAYMPQG LGKNLYPTLS VFDNVDFFGR LFGQGKQERE RRIRELLQST GLAAFADRPA GKLSGGMKQK LGLCCALIHD PDLLILDEPT TGVDPLSRRQ FWELIDRIRA ERAGMSVIVA TAYMEEAARF DWLAAMDAGR VLATGAPAEL LRQTGAATLD GAFIALLPEQ QRRGYAEVVI PPRPVGVDDD IAIEAEHLTM RFDDFTAVDD VSFRIGRGEI FGFLGSNGCG KSTTMKMLTG LLPASEGTAK LFGQEVDPND MAVRHRVGYM SQAFSLYSEL TVRQNLDLHA RLFGMPVEKI ASRIDEMAQR FDLANYIDSL PDPLPLGIRQ RLSLAVAVIH SPAILILDEP TSGVDPIARD GFWRILSDLS RTDNVTIFIS THFMNEAERC DRISLMHAGK VLVSDSPKNI VESRSADSLE AAFIACLEAA IGQTASVAPD IGPIAAAAEK KAEAGMSAKP GAWQRLFDPR RMFAYTRREA LELRRDPIRA TLATIGSVIL MFVLGYGINM DIENLTFAAL DRDDTTISRD YILQIAGSRY FKEKAPITDY ADLDRRMRSG ELSLAIEIPP GFGRDVARGK NVEIGGWIDG AMPTRAETAR GYVQAMHASW LTQKATEQYG AAAVAGSYNL EIRYRYNPDV KSLVAMAPAV IPLLLLLIPA MLAVLSVVRE KELGSIVNFY TTPVTRLEFL IGKQLPYIAL GMLNFVLLTA FAIFVFRVPF TGSLLALASG ALLYVTTTTA MGLMISIFMS SQIAAIFGTA IITLIPAMQY SGLMDPVSSL QGAGALIGRI YPTTYFVNIT RGTFSKALDF GDLSGSFVPL LIMIPVLLGL GSMLLKKQAN
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