| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3541 |
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| Symbol | |
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| ID | 3973948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3933765 |
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| End bp | 3934733 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637926652 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_533399 |
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| Protein GI | 90425029 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | [TIGR02782] P-type conjugative transfer ATPase TrbB |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0478777 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.532138 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGGTA TCACTCAGCA ATCTGCAGCG ATTATGCGTG GCGCGCGCAT GCTGCGCACG
GCGCTCGGGG CAGCGATCGC CGGCTTCCTG GAAGACCCTG CGGTCGTCGA GGTGATGCTC
AACCCCGACG GGCGGCTCTG GATCGATCGG CTTTCGGAGG GGCTCTTTGA TACTGGCGAA
CGCCTGAACG CCGCCGACGG CGAGCGGATC GTCCGCCTGG TCGCGCACCA TGTCGGCGCC
GAGGTTCATG CCGGAAGTCC CCGCGTCTCA GCCGAATTGC CCGAGACCGG GGAACGGTTC
GAAGGGTTGC TGCCGCCGGT GGTCACCGCG CCGACGTTTG CGATCCGCAA ACCCGCCGTC
GCCGTGTTCA CGCTCGATGA CTACGTGGCT GCCGGCATCA TGTCCGCCGG GCAGGCGACG
GCGCTGCGTC GCGGCGTCGC GGCGCGCAAC AACATCCTCG TTGCCGGCGG GACCTCGACC
GGCAAGACCA CGCTCACCAA TGCGCTGCTC GCCGAGGTCG CTAAAACAGC CGATCGCGTG
GTGCTGATCG AGGATACCCG GGAGCTGCAA TGTCTGGCGC CCAATCTGGT GGCGCTTCGG
ACCAAGGACG GCGTTGTGTC GCTGTCGGAG CTGGTGCGCG CCTCGCTTCG CCTGCGCCCC
GACCGCATCC CGATCGGTGA GGTCCGCGGC GCCGAGGCAC TCGACCTGTT GAAGGCCTGG
GGCACCGGCC ACCCGGGTGG CGTCGGCACC ATCCACGCCG GCAGCGCCCT CGGCGCATTG
CGCCGTCTTG AGCAACTCAT CCAGGAAGCC GTCGTCACCG TCCCGCGCTC CTTGATCGCC
GAGACCATCG ACGTCGTCGC GGTGCTGTCC GGCCGCGGTT CGGAACGCCG GCTCACGGAG
CTGATGCGCG TCACCGGGCT CGGGCCCGCC GGCGACTACA CCCTTTCACC AGAAGGAGAT
CGATCATGA
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| Protein sequence | MAGITQQSAA IMRGARMLRT ALGAAIAGFL EDPAVVEVML NPDGRLWIDR LSEGLFDTGE
RLNAADGERI VRLVAHHVGA EVHAGSPRVS AELPETGERF EGLLPPVVTA PTFAIRKPAV
AVFTLDDYVA AGIMSAGQAT ALRRGVAARN NILVAGGTST GKTTLTNALL AEVAKTADRV
VLIEDTRELQ CLAPNLVALR TKDGVVSLSE LVRASLRLRP DRIPIGEVRG AEALDLLKAW
GTGHPGGVGT IHAGSALGAL RRLEQLIQEA VVTVPRSLIA ETIDVVAVLS GRGSERRLTE
LMRVTGLGPA GDYTLSPEGD RS
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