| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3532 |
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| Symbol | |
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| ID | 3973939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3925335 |
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| End bp | 3926570 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637926643 |
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| Product | conjugation TrbI-like protein |
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| Protein accession | YP_533390 |
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| Protein GI | 90425020 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.404539 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGGCG ACCGGCGACA GGACGACGCC TCCGATGCGT TTCGGTCGGC CAGCGATCCG
GTCGCGGCGT TTCAAATCCG ACCAGAGCGA CCGAGGGTGA CGCGGCTCTC GCGCAAGGTG
CTGATGGCCG GTACCGGGAT TGCGCTGGTG GCGGTGTCCG GCGCGGTGTT CTGGGCGTTG
CAGAACAATC GCCATCGTGC GGACGCTCCC GAGGAGCTCT ACAGCACGGA GCATCGCACT
AAGGCCGATG GATTGTCCGG GCTGCCACGG GATTACGCCG GCATCCCGCG CCAAGCGACG
CCGCTTGGTC CGCCGCTGCC CGGCGATCTC GGGCGGCCCA TGCTCAACGC CGGCGCGGCA
TCGAACACGG TCATCCCAGC TGCACCCGCG GCGGATCCGG AGGCGCAGCG GCGGGGCCAA
GAGATCGAGG CGGCGCGGTT GAGCCGGTTG TTTGCACCGA CCAACACCCG AGAACTGCCT
CCGATCGTGC CAACTCCGGC GTCGGCAACA CCACCTGAAG CCAGCGCAGT GTTGAATCCC
CTCCCACAAC CGCCGGCCGA TTCGACCTTC GCGCAGAACG GCCAGGACCG GAAACTCGCC
TTCATCAACG CCTCGGTCGA TCGGCGGACG ACGAGCCCAG ACCGGCTGGC AGCTCCGGCC
TCGCCTTACG TGGTGCAGGC CGGCACCGTC ATTCCCGGCG CGCTGATCAC CGGCATCCGC
TCGGACTTGC CGGGCCTGAT CACCGCCCAG GTCTCGGAAA ACGTCTATGA CAGCCCGAGC
GGCAAGTTTC TTCTCATTCC ACAAGGCGCG CGGCTGATCG GCCAGTACGA CAGCCAGGTC
GCTTTCGGTC AGTCGCGCGT CCTCCTGGTC TGGACCCGGC TGATCATGCC GAACGGCAAA
TCGATCGTAC TGGAGCGCCA GCCCGGCGCC GACACCGCCG GGTATGCGGG ACTGGAGGAC
GAGGTCGACA ACCATTGGGG TGCGCTGTTC AAGGCGGCGA TGCTCTCGAC GCTGCTCAGC
GTCGGCTCCG AAGTCGGCAC CAGCGGCAGC GAGGACGATG TCGTCCAGGC GATCCGCCGT
GGCGGCTCGC AGAGTTTCAA TCAGGTCGGG CAACGCGTCG TCAGCCGCAA CCTCGACATT
CAGCCGACGC TCACGATCCG CCCCGGATTC CCGGTGCGTG TGATCGTCAA CCGCGACCTG
GTGCTGGCGC CATACAATCA GGAGGCCGCA AAATGA
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| Protein sequence | MNGDRRQDDA SDAFRSASDP VAAFQIRPER PRVTRLSRKV LMAGTGIALV AVSGAVFWAL
QNNRHRADAP EELYSTEHRT KADGLSGLPR DYAGIPRQAT PLGPPLPGDL GRPMLNAGAA
SNTVIPAAPA ADPEAQRRGQ EIEAARLSRL FAPTNTRELP PIVPTPASAT PPEASAVLNP
LPQPPADSTF AQNGQDRKLA FINASVDRRT TSPDRLAAPA SPYVVQAGTV IPGALITGIR
SDLPGLITAQ VSENVYDSPS GKFLLIPQGA RLIGQYDSQV AFGQSRVLLV WTRLIMPNGK
SIVLERQPGA DTAGYAGLED EVDNHWGALF KAAMLSTLLS VGSEVGTSGS EDDVVQAIRR
GGSQSFNQVG QRVVSRNLDI QPTLTIRPGF PVRVIVNRDL VLAPYNQEAA K
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