| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3519 |
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| Symbol | |
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| ID | 3973886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3911323 |
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| End bp | 3914205 |
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| Gene Length | 2883 bp |
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| Protein Length | 960 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637926631 |
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| Product | ribonucleotide-diphosphate reductase subunit alpha |
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| Protein accession | YP_533378 |
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| Protein GI | 90425008 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit
[COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
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| TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0732162 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAGGT CTCTTCAAGC CGAACGCCAA CTCGATCGCC CGCCATCTGT CGTGGAGCAC
GTGACTGCAG CCAATCCAGG CTATCGGCTT ATCCGCCGCA ACGGCACGGT GACCCGGTTC
GATCCGACGA AGATCACGCT CGCTTTGACC AAGGCGTTCC TGGCGGTGGA AGGCAGCAGC
GCCGCGAGCT CGCGCCGTAT CCATGACGTC GTCGGCGGCC TGACCCAGCA GATCGTCAGC
AGCCTGACGC GGCGCGCCGA CCTCGGCCAC ACCTTCCTGA TCGAGGACGT CCAGGATCAG
GTCGAACTTG CGCTGATGCG GGGCGAGTAT CACAAGGTGG CGCGCGCCTA TGTGCTCTAT
CGAGAAGACC GCGCGAAGCA GCGTATCGAA AGCGCCCAGA ACGCCCAGCT CGAACCGGCA
TCACCGCTCC GCGTGACAGC CACCGACGGA ATCGTCGTTC CGCTGGATGC CGTCCGTCTT
GCCGCGGTCG TCGAGGAGGC ATGCGCGGGG TTGGACGATG TCCGGGCGTC GCAGGTTCTG
AGCGAAACCC GCCGCAACCT CTATGACGGC ATATCGCTGG ACGAACTGGC ACTGGCGCCG
ATTCTCGCCG CGCGGACGCT GATCGAGACC GAACCGAACT ACGCCAAGGT GAGTGCCCGG
CTGTTGCTCG ACAAGCTGCG CCGCGAAGCG CTCAGCTTTG TTGCCGGCCG TCCCGAGCAG
GCGACCCACG CCGAAATGGC GGGTCGGTAC GGCGACTATT TCAAGGCCTA CATCGCCACC
GGCATCGCCA GCGAACTGCT GGACCGCGAA CTGGGCCGCT TCGATCTCGT CCGGCTCTCC
GCTGCGCTGA AACCCGAGCG CGATCTGCAG TTCGACTATC TGGGGCTCCA AACCCTTTAC
GATCGCTACT TCCTACATGT CGATGGAACG CGCTTCGAAT TGCCGCAGGC CTTCTTCATG
CGGGTCGCGT GCGGACTGGC GCTGCGCGAG ATCGACCGGG AGGACAAGGC GATCGAATTC
TACGAGCTGT TGTCGTCGTT CGATTTCATG GCCTCGACGC CGACGCTGTT CAATGCGGGC
ACGCTGCGCC CGCAGCTTTC GTCGTGCTTC CTGACCACGG TGCCGGATGA TCTCGACGGC
ATATTCAAGT CGATCAAGGA CAACGCGCTG CTGTCGAAAT ATGCCGGCGG CCTCGGTAAC
GACTGGACCC GGGTGCGCGG GCTCGGCGCC CATATCAAGG GCACCAACGG CGAGAGCCAG
GGCGTGGTGC CGTTTCTGAA GGTGGCGAAC GATACCGCAA TCGCCGTCAA TCAAGGCGGC
AAGCGTAAGG GCGCCGTGTG CGCCTACCTC GAAACCTGGC ATATCGATAT CGAACAATTC
CTCGATTTGC GAAAGAACAC CGGCGACGAC CGGCGCCGCA CCCACGACAT GAACACCGCC
AATTGGGTGC CGGATCTGTT CATGACGCGG GTGGAGCAGG ATGGCGGCTG GACATTGTTC
TCGCCCGACG AGACCCCGGA TCTCCACGAC CTCACCGGGC AGGCGTTCGT CGAACGCTAC
GAACAGTACG AAGCCAAGGC CGAACGCGGC GAAATGCGAG TGTTCAAGCG GCTGCGCGCC
GCCGACCTCT GGCGCAAGAT GCTGACCATG TTGTTCGAGA CCGGCCACCC CTGGATCACG
TTCAAGGACC CCTGCAACCT GCGCTCGCCG CAAAGCCACG CCGGAGTGGT GCATTCCTCC
AACCTGTGCA CCGAAATCAC GCTGAATACG TCGACCACCG AAGTGGCGGT CTGCAACCTC
GGCTCGATCA ATCTCGTCAA CCACCTGGTC AACGGCGCGA TCGATCACGC CCGTCTCGCG
CGCAGTGTGG GAACCGGGAT GCGCATGCTG GACAATGTGC TCGACGTGAA TTTCTACACG
ATTCCGGAAG CGCGCAGCTC GAACCTCAAG CATCGCCCCG TCGGTCTCGG AATCATGGGC
TTCCAGGATG CGCTCAACAT CCTCCGGCTA CCCTACGCGT CGGAGCAGGC GGTGGCGTTC
GCCGACGAGA GCATGGAGTC GGTGTCCTAT TGGGCGATCT CGGCGTCGGT CGATCTCGCC
GCCGAGCGTG GCCGGTATCC ATCGTTCGAA GGATCGCTGT GGTCGAAGGG TGTGCTGCCG
CTCGATTCCA TCGCACGCGT CGATGCGGCG CGGGCGCTGC CCGTCGAGGT GGATCGGTCG
TTCCGGCTCG ATTGGGATGG CTTGCGAGCG CGGGTCAAGG CCGTCGGGAT GCGCAACTCC
AACACGATGG CGATCGCGCC GACCGCGACG ATCTCCAACA TCTGCGGCGT CAGCCAATCG
ATCGAACCCG CCTACCAGAA CTTATACGTC AAATCCAACA TGTCGGGCGA CTTCACCGTG
GTGAACACCT ACCTGGTCAA CGATTTGAAG GCGCGCGGGC TGTGGGACGA GGTGATGGTG
TCGGATCTGA AGTATTTTGA CGGCAGCGTC GGGCAGATCG ACCGTGTTCC CGACGATCTG
AAGGCGCTGT ACGCCACCGC CTTCGAAATC GACAGCGCCT GGTTGATCGA GGCTGCGGCA
CGGCGACAGA AGTGGATCGA CCAGTCGCAG TCGCTCAACC TCTACCTTGC CAACCCGAAT
GGCAAGAAGC TCGATGCGCT GTATCGGCTC GCCTGGCGTC GCGGCTTGAA GACGACGTAC
TACCTGCGTT CACGTTCCGC CACCCATGTC GAGAAATCGA CGCTCAAGGG CACCGACGGC
AAGCTCAACG CGGTCTCCGC CGGGCTTGCC ATGGATACCC CGCGTGCTGT CGCTGTGGCC
TGCGGCGCAG TTGCCGGTCA AGCTTGCGCG ATCGATGATC CGACCTGCGA GGTGTGCCAG
TGA
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| Protein sequence | MSRSLQAERQ LDRPPSVVEH VTAANPGYRL IRRNGTVTRF DPTKITLALT KAFLAVEGSS
AASSRRIHDV VGGLTQQIVS SLTRRADLGH TFLIEDVQDQ VELALMRGEY HKVARAYVLY
REDRAKQRIE SAQNAQLEPA SPLRVTATDG IVVPLDAVRL AAVVEEACAG LDDVRASQVL
SETRRNLYDG ISLDELALAP ILAARTLIET EPNYAKVSAR LLLDKLRREA LSFVAGRPEQ
ATHAEMAGRY GDYFKAYIAT GIASELLDRE LGRFDLVRLS AALKPERDLQ FDYLGLQTLY
DRYFLHVDGT RFELPQAFFM RVACGLALRE IDREDKAIEF YELLSSFDFM ASTPTLFNAG
TLRPQLSSCF LTTVPDDLDG IFKSIKDNAL LSKYAGGLGN DWTRVRGLGA HIKGTNGESQ
GVVPFLKVAN DTAIAVNQGG KRKGAVCAYL ETWHIDIEQF LDLRKNTGDD RRRTHDMNTA
NWVPDLFMTR VEQDGGWTLF SPDETPDLHD LTGQAFVERY EQYEAKAERG EMRVFKRLRA
ADLWRKMLTM LFETGHPWIT FKDPCNLRSP QSHAGVVHSS NLCTEITLNT STTEVAVCNL
GSINLVNHLV NGAIDHARLA RSVGTGMRML DNVLDVNFYT IPEARSSNLK HRPVGLGIMG
FQDALNILRL PYASEQAVAF ADESMESVSY WAISASVDLA AERGRYPSFE GSLWSKGVLP
LDSIARVDAA RALPVEVDRS FRLDWDGLRA RVKAVGMRNS NTMAIAPTAT ISNICGVSQS
IEPAYQNLYV KSNMSGDFTV VNTYLVNDLK ARGLWDEVMV SDLKYFDGSV GQIDRVPDDL
KALYATAFEI DSAWLIEAAA RRQKWIDQSQ SLNLYLANPN GKKLDALYRL AWRRGLKTTY
YLRSRSATHV EKSTLKGTDG KLNAVSAGLA MDTPRAVAVA CGAVAGQACA IDDPTCEVCQ
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