| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3510 |
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| Symbol | |
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| ID | 3973204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3901078 |
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| End bp | 3901998 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637926622 |
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| Product | methylisocitrate lyase |
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| Protein accession | YP_533369 |
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| Protein GI | 90424999 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.120815 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0535493 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTTACC TCATCGGAGC GAATGTGCCG GAGCAGCCCG CCGGAATTCG CTTCCGGGAT
TTGCTGAATC ATCCCGGCAT TCTGCGCATC CCGGGGACCC ATAATGGCAT GGCGGCGCTG
CAGGCGCGCG ATGCCGGGTT CGCGGCGGTG TATCTCTCTG GAGCCGCCAT GACGGCGTCG
ATGGGGCTGC CGGACCTCGG CATCATATCG GTGGAGGAGG TGGCCTTCTT CGTCCGTCAG
GTCTCGCGAG CGAGCGGACT TCCGGTCCTG GTCGATGGCG ACACTGGCTA CGGCGAAACC
CTCAACGTGA TGAATATGGT GAGGAGCTTT GAAGACGCCG GAGCGGCAGC GGTCCATATC
GAAGACCAGT TGCTGCCGAA GAAGTGCGGG CATCTGAACG ACAAAAGACT GGCCGATCCG
CGCGACATGG CCGCGAAGGT CGCCGCGGCC GTCAGAGCGC GGCGCCATCT CTATGTCATC
GCACGGACCG ACGCGGCGGC GAGCGAGGGA ATGGACGGGG CCGTGGCGCG GGCCAAGCTG
TATCGCGAGG CTGGCGCCGA CGCGATCTTT CCGGAAGCGC TGACGTCCGC CGACATGCTG
CGGGAATTTG CGCGCCGCAT GCCCGGCGTT CCGCTGCTCG CCAACATGAC CGAGTTCGGC
AAGACGCCGT TCTTTACGGC GGCGGAATTT GAAGGCATGG GGTATCGCAT GGTGATCTGG
CCCGTGTCAT CGCTCCGCGT TGCGAACAAG GCCCAGGAGG CGTTATATGC GGCGATCAAA
CGCGACGGCG GCACCCAATA CGTCGTCGAG CAGATGCAGA CCAGGGCGGA ACTATATGCG
ACGATCGGAC TGCAGGACTA CGAGGCGCTC GATGCCAGCA TCGTTCAGAC CATCATTCCG
GAGGCGCCGT TGCCGAGGTG A
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| Protein sequence | MTYLIGANVP EQPAGIRFRD LLNHPGILRI PGTHNGMAAL QARDAGFAAV YLSGAAMTAS
MGLPDLGIIS VEEVAFFVRQ VSRASGLPVL VDGDTGYGET LNVMNMVRSF EDAGAAAVHI
EDQLLPKKCG HLNDKRLADP RDMAAKVAAA VRARRHLYVI ARTDAAASEG MDGAVARAKL
YREAGADAIF PEALTSADML REFARRMPGV PLLANMTEFG KTPFFTAAEF EGMGYRMVIW
PVSSLRVANK AQEALYAAIK RDGGTQYVVE QMQTRAELYA TIGLQDYEAL DASIVQTIIP
EAPLPR
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