| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3403 |
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| Symbol | |
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| ID | 3970447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3786650 |
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| End bp | 3788155 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637926514 |
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| Product | pseudouridine synthase RluD |
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| Protein accession | YP_533262 |
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| Protein GI | 90424892 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0666836 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0916306 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGC GCCCGCCGCG CGAGCGCTCC ACCGAGCGCA CCGAGCGCCC GCAACGCAGC
GAGCGGGCCT TCGGGGAGCG CCCGCCGCGC GGCGAGCGTG CCGAGCGCCC GCAGCGCGCC
GAGCGATCAT TTGCCGAACG CTCCGATCGC CCGCAACGCA CTGAGCGTTC CGAACGGCCG
CAACGCGCTG AACGTTCAGA GCGGGCTTTC GGCGACCGCC CGCAACGCGC CGAGCGCGCC
GAGCGATCGT TCGGCGAGCG CCCCGCCAAA TCCGATCGTT CGCGGTCGGA GCGGCCGCAA
CGCGCCGATC GCCCCACCGC GGATCGTCCG CAGCGCGCCG AGCGATCCGA TCGGCCGCGA
TCCGATCGCG CCGAGCGTTC CGAACGCCCG GCAAATTTCC GCCCCGGCAG CAAACCGCCG
CGCGTGCCGC CGCGCACGCC TCGCCCCGAG CCGCGCCAAA CGCCGCACAT CGAGGAACCC
GAGAAGCCGG TGGTGCCGGA CGTGCCGTTG CCGACCAAGG TCGAGACCGT GGTGGTGTCG
GCCGACGAGA ACAACATGCG GGTCGATCGC TTTCTCGAGG CGCGCTATCC GGGGCTATCG
TTCTCCCACA TCCAGCGCAT CGTCCGCAAA GGCGAGCTGC GCGTCGACGG CAAGCGCGCC
GACAGCAAGG ACCGGCTGGA AGAAGGCCAG ACCGTGCGGA TTCCGCCGCT CAAGCTCGAC
GCGCCGAAGG TCGGCACCGG CAATCTGTCC GAAGCCGAGC AGAAGACCAT GGCGGCGTTG
CGGGCGATGA TCCTCTATGA GGACGCCGAC GTCATGGTGC TGAACAAGCC GGCCGGGCTC
GCGGTGCAGG GCGGAAGCGG CACCACGCGC CACGTCGACC TGATGCTGGA GGTGATGCGC
GACGCCAAGG GCCAGAAGCC GCGCCTGGTG CATCGGCTGG ACAAGGAGAC CGCCGGCTGT
CTGCTGATCG CCAAAACCCG CTTTGCCGCC ACCGCCTTGA CCGGCGCGTT CCGCGAACGC
TCGGCGCGCA AAGTCTATTG GGCGCTGGTC GCCGGCGTGC CGAAGCCGAA GCAGGGCCGC
ATCTCGACCT ACCTCGCCAA GGAAGAGAGC GAAGACGACA CCATCATGCG GATCGCCGAG
CATGGCGACG AGGGCGCCAG CCACGCGGTG ACCTACTACG CGGTGGTAGA GACCTCGGCG
AGCAAGCTCG CCTGGGTGTC GCTGAAGCCG GTGACCGGGC GCACCCATCA GCTGCGCGCC
CATATGGCGC ATATCGGCCA CGCCATCGTC GGCGATCCGA AGTACTTCAA CATCGAGAAC
TGGCAATTGC CCGGCGGGCT GCAGAACCGG CTGCACCTGT TGGCACGCCG CATCGTGATT
CCGCATCCGC GCGGCGGCAC CATCGACGTC AGCGCGCCGC TGCCGCCGCA TATGCTGCAA
TCCTGGAACC TGCTCGGGCT GGAACACGAC CGCTTCGATC CGATCGAAAA CGCCCCGGAG
GAGTAA
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| Protein sequence | MSKRPPRERS TERTERPQRS ERAFGERPPR GERAERPQRA ERSFAERSDR PQRTERSERP
QRAERSERAF GDRPQRAERA ERSFGERPAK SDRSRSERPQ RADRPTADRP QRAERSDRPR
SDRAERSERP ANFRPGSKPP RVPPRTPRPE PRQTPHIEEP EKPVVPDVPL PTKVETVVVS
ADENNMRVDR FLEARYPGLS FSHIQRIVRK GELRVDGKRA DSKDRLEEGQ TVRIPPLKLD
APKVGTGNLS EAEQKTMAAL RAMILYEDAD VMVLNKPAGL AVQGGSGTTR HVDLMLEVMR
DAKGQKPRLV HRLDKETAGC LLIAKTRFAA TALTGAFRER SARKVYWALV AGVPKPKQGR
ISTYLAKEES EDDTIMRIAE HGDEGASHAV TYYAVVETSA SKLAWVSLKP VTGRTHQLRA
HMAHIGHAIV GDPKYFNIEN WQLPGGLQNR LHLLARRIVI PHPRGGTIDV SAPLPPHMLQ
SWNLLGLEHD RFDPIENAPE E
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