Gene RPC_3380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_3380 
Symbol 
ID3970540 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp3759610 
End bp3761313 
Gene Length1704 bp 
Protein Length567 aa 
Translation table11 
GC content66% 
IMG OID637926492 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_533240 
Protein GI90424870 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein
[COG4564] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.689596 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTACCA CGATGTCGAA TCGCTTCAGA CTGACGATCG GTCGCAAGAT CTACGCCCTC 
ATCGGACTGG GCTTCGTCGG GCTGCTCGGC GTCACTTTTC TGGATTCCCG TGAGCTCGCG
TCCGGGTTGA AGATGCAGAA GCAGATCGAG CTGAAGCATT TGGCCGAATT GGCGCTCGCC
GTGGTCAAGG AAGAGCAGGC CATTGGCCAG GCCGGCGGCA TCGCCGTCGC CGAGGCGCAG
AAGCGGGCGC AGGCCCGGCT GGCCGGCCTG CGTTACGGCA ACAATGATTA CTTCTTCGTC
AGCGACCTGC AGAACCGCAT GGTGATGCAT CCGATCAGCC CGCAGCTGAA TGGGCAGGAT
GTCGGCGACA CCAAGGACGC CGACGGCAAG CAGTTGTTCG TCGAGATGAG CGACCTTGTC
CGTCGCGACG GCGGCGGATT TGTCGACTAT CAATGGGCCA AGCCGGGGGC GCAGAAGCCG
TCGCCGAAGC TGACCTATGT CATCGGGTTC GCGCCGTGGG GCTGGGTGAT CGGCACCGGG
GTGTATATCG ACGATCTCCA TGAACAGACC TGGACCGCGA CCCAGCGCTC GCTGATCGTC
GCGGCTTTGG TGGTGCTGAT CACGCTTGCG GTGTCGATCT TCATGGCCGG CCGGATCACC
AAGCCGTTGC ATCTGATGAC CGACGCGATG AAGGCGCTGG CGGGCGGCAA GCTCGACGTT
GCCGTGCCGG GGATCGGCCG CAGCGACGAA GTCGGCGAGA TGGCAGAGGC CGTCGAAGTG
TTCAAGACCA ATGCGGTGGC GCGGCAGCGG CTCGAGGCCG AGCAGCACGA GCTGGAGGCG
CGCGCCGCGG CGCAGCGCAA GGCCGATACC AACAAGCTCG CCGACGATTT CGAAGGCGCG
GTCGGCGAGA TCATCCACAC GGTTTCTTCG GCTTCGACCG AGCTGGAAGC ATCCGCCGCG
ACCCTGACCT CGACGGCCGA ACGCTCGCAG CAGCTCGCCA CCGTTGTGGC GGCGGCCTCC
GAGGAAGCCT CGACCAATGT CCAGTCGGTG GCCTCTGCGA CCGAGGAGAT GACTTCGTCG
GTCCATGAAA TCAGCCGTCA GGTGCAGGAT TCCGCCCGCA TCGCCCATGA GGCCGTCGAT
CAGGCGCGCA AAACCAACGA CCGGGTCGGC GAATTGTCCA AGGCCGCGGC GCGGATCGGC
GACGTCATCG AACTGATCAA CACCATCGCG GGGCAGACCA ATCTGCTGGC GCTGAACGCC
ACCATCGAAG CCGCACGCGC CGGCGAAGCG GGGCGCGGCT TTGCCGTGGT CGCCAGCGAG
GTCAAGGCGT TGGCCGAGCA GACCGCGAAA GCCACCGGCG AGATCGGCCA GCAGATCACC
GGGATTCAAG CCGCGACTGA GGATTCCGTC GCGGCGATCA AGGAGATCAG CGACACCATC
GGCAAGATGT CGGAGATCGC CTCGACCATC GCCTCGGCGG TGGAGCAGCA GGGCGCGGCC
ACCCAGGAGA TTTCCCGCAA CGTACAACAG GCCGCGCAGG GCACCCAGCA GGTCTCGGCC
AACATCAGCG ACGTGCAACG CGGCGCCAGC GAGACCGGAT CGGCCTCGTC CGAAGTGCTC
TCGGCGGCGC AGTCGCTGTC GCGCGACAGC AATCGGCTGC AGGACGAGGT CAGCCGATTC
CTCCGCACCG TCCGCGCCGC CTGA
 
Protein sequence
MATTMSNRFR LTIGRKIYAL IGLGFVGLLG VTFLDSRELA SGLKMQKQIE LKHLAELALA 
VVKEEQAIGQ AGGIAVAEAQ KRAQARLAGL RYGNNDYFFV SDLQNRMVMH PISPQLNGQD
VGDTKDADGK QLFVEMSDLV RRDGGGFVDY QWAKPGAQKP SPKLTYVIGF APWGWVIGTG
VYIDDLHEQT WTATQRSLIV AALVVLITLA VSIFMAGRIT KPLHLMTDAM KALAGGKLDV
AVPGIGRSDE VGEMAEAVEV FKTNAVARQR LEAEQHELEA RAAAQRKADT NKLADDFEGA
VGEIIHTVSS ASTELEASAA TLTSTAERSQ QLATVVAAAS EEASTNVQSV ASATEEMTSS
VHEISRQVQD SARIAHEAVD QARKTNDRVG ELSKAAARIG DVIELINTIA GQTNLLALNA
TIEAARAGEA GRGFAVVASE VKALAEQTAK ATGEIGQQIT GIQAATEDSV AAIKEISDTI
GKMSEIASTI ASAVEQQGAA TQEISRNVQQ AAQGTQQVSA NISDVQRGAS ETGSASSEVL
SAAQSLSRDS NRLQDEVSRF LRTVRAA