| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3371 |
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| Symbol | |
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| ID | 3970531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 3745634 |
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| End bp | 3746746 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637926483 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_533231 |
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| Protein GI | 90424861 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.165029 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTAAAA AGAGTGTCAT CGGGTTGTTG GCGGTCGCGC TGCTGGCGGG AGCATCGTAC
TACGTCGTCA AGCACGGCAT CCCCGGCCGT CACGCCCCGG CGCATCGCGG CGCGCCGGCG
CAGACGGTGG CGGCGCAGAC CGCTCAGATG CAGACGTGGC AACCGGCCAT GGAGCTGGTC
GGAGAGCTGC GCGCCTCCAA GGGCGCGGAT CTCGCGCTGC AAGTCTCCGG CATCGTGCAG
TCGCTGTCGT TCGAATCCGG CGACACCGTG CAAGCCGGCG CGCCGCTGCT GCGGCTGGTC
GCCGACGACC AGATCGCCAA ACTCGACTCG CTGAAGGCCA CCGCCGAACT GAACGTCCTG
ATCCTGAAAC GCGACACCGA GCAGCTCAAG ATCAAGGCCG TGAGCCAGGC CACGGTGGAC
AATGACGAGG CCAATCTGAA GAACGCCAAG GCTCTGGTGG CGCAACAGCA GGCGTTGGTC
GCGCAATATA GCCTGACGGC GGCCTTTGCG GGACGCCTCG GAATCCGCGG CGTCGATCTC
GGCCAGTATC TCAGCGCCGG CACGACGATC GTCACGCTGC AGGCGCTGGA TCCCTTGTTC
GCCGATTTCT TCGTGCCGCA ACAATTCTTC GGCCGCCTGA AGGTTGGGCA GCCGGCGAAA
GTGAAAGTCG ACTCCTTTCC CGGGCAGGAG TTTGCCGCCA TCGTCAGCGC CATCAACGCC
AAGGTCGAGA GCGGCAGCCG CAACGTCAAG GTGCGCGCGG AGCTGAAGAA CCCGCAAGGC
CGGCTGGTGC CCGGCATGTT CGCCAAGGTC GCGCTCGAGA TCGACGCGGC CGAAAAATTC
GTGACGCTGC CGCAGACCGC CATCGTCTCC AATCCCTACG GCTCGACCGT GTTCGTGCTG
GACAAGGGCG CCGACGGCAC CGGCCTGGTG GCCCGGGAGA CCTTCGTCAA GCTCGGGCAG
GCGCGCGGCG ATTTCGTCGC CATCGTGTCC GGATTGAAGG AAGGCGAGAC GGTGGTGGTG
GCCGGCCAGA TCAAGCTGCG CAACGGCACG CCGGTGGTGA TCGACAACAA CAACATTCCC
GAGGCCAAGC TCGATCCCAA AGTGTCGGAC TGA
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| Protein sequence | MSKKSVIGLL AVALLAGASY YVVKHGIPGR HAPAHRGAPA QTVAAQTAQM QTWQPAMELV
GELRASKGAD LALQVSGIVQ SLSFESGDTV QAGAPLLRLV ADDQIAKLDS LKATAELNVL
ILKRDTEQLK IKAVSQATVD NDEANLKNAK ALVAQQQALV AQYSLTAAFA GRLGIRGVDL
GQYLSAGTTI VTLQALDPLF ADFFVPQQFF GRLKVGQPAK VKVDSFPGQE FAAIVSAINA
KVESGSRNVK VRAELKNPQG RLVPGMFAKV ALEIDAAEKF VTLPQTAIVS NPYGSTVFVL
DKGADGTGLV ARETFVKLGQ ARGDFVAIVS GLKEGETVVV AGQIKLRNGT PVVIDNNNIP
EAKLDPKVSD
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