Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3197 |
Symbol | |
ID | 3971995 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 3537948 |
End bp | 3539201 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637926307 |
Product | beta-lactamase |
Protein accession | YP_533058 |
Protein GI | 90424688 |
COG category | [V] Defense mechanisms |
COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.27684 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.21357 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGGCC AAGATCCGAT CAAATCCGCG CCGTCCGCAG CCGCGTCCGG GATGTCCGCC GCCGCGCTGG GGCGCGTCGA CGACCATCTG AAGCGCCGTT ATCTCGACAG CGGACGGTTT CCCGGCACCC AACTCCTGGT CTATCGCCGC GGCCAGATCG TGCACAACAC GGTGCAGGGC TTTGCCGATG TCGAGCGGCA GACACCGGTC AAGCCGGATA CCATCTTCCG GATCTATTCG ATGACCAAGC CGCTGACCTC GGTGGCGTTC ATGATGCTGG TCGAGGAAGG CCGCGTCGCG CTCGACGAAC CGGTGGCCAA GTACATTCCG GAATGGAGCA ATCTCGGCGT GTTCCAGGCC GGCATCGCGC CGAATTTCCT GACCCGGCCG CCGGCGCGGC CGATGCTGAT CGTCGACCTG CTGCGGCACA CCTCGGGGCT CACCTACGGC TTCCAGAACC GCAGCAATGT CGACGCCGCC TATCGCGAGA AGAAGATCGG CGAATTCGAA CTGGCCGGCA CGCTGCAGGG CATGATCGCG GATCTGGCGA GCATTCCGCT GGAGTTCTCG CCCGGCGACG CCTGGAACTA CTCGGTCGCA ACCGACGTGC TCGGCTATCT GATCGGCACC ATCAGCGGCC GACCGTTCGA AGAGTTTCTT CACGAGCGCG TCCTCGATCC GCTCGGCATG ACCGACACCG GCTTCTTCGT GCCGCCGGAT AAGGCGCATC GGCTGGCCGC CTGCTATGCG GCCGACGGCA AAGGCGGCTT CACGCTGTAC GACGATCCGG CCAACAGTCC CTATCTGAAG CCGCCCGGCT TCGTCTCCGG CGGCGGCGGC CTATTGTCGA CCGCCTCCGA CTATCTGATC TTTTGCCGCG CCTTGCTCAA TGGCGGCGAA CGCGACGGCG TGCGGCTGAT CGGCCCGAAG ACGCTGGCGC TGATGACCTC GAATCATCTG CCGGGCGGCC GCGACCTCAC CGAAATGTCG AAATCGATGT TCAGCGAGGC GGCCTATGCG GGGATCGGCT TCGGGCTCGG TTTTTCGGTG ACGTTGCAAC CTGCGCGGAC GCTGATCGCC GGCAGCGCCG GCGAATATGC CTGGGGCGGC GCCGCCTCGA CCGCGTTCTG GATCGACCCG GCCGAGCAGC TGATCACCAT CTTCATGACC CAGCTGTTGC CGTCGAGCGC CTACCCGCTG CGCCGCGAGC TGCGCACCAT GGTGTATGCG GCGATCACAG AGAGCAACGT GTAG
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Protein sequence | MPGQDPIKSA PSAAASGMSA AALGRVDDHL KRRYLDSGRF PGTQLLVYRR GQIVHNTVQG FADVERQTPV KPDTIFRIYS MTKPLTSVAF MMLVEEGRVA LDEPVAKYIP EWSNLGVFQA GIAPNFLTRP PARPMLIVDL LRHTSGLTYG FQNRSNVDAA YREKKIGEFE LAGTLQGMIA DLASIPLEFS PGDAWNYSVA TDVLGYLIGT ISGRPFEEFL HERVLDPLGM TDTGFFVPPD KAHRLAACYA ADGKGGFTLY DDPANSPYLK PPGFVSGGGG LLSTASDYLI FCRALLNGGE RDGVRLIGPK TLALMTSNHL PGGRDLTEMS KSMFSEAAYA GIGFGLGFSV TLQPARTLIA GSAGEYAWGG AASTAFWIDP AEQLITIFMT QLLPSSAYPL RRELRTMVYA AITESNV
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