| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3010 |
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| Symbol | |
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| ID | 3973617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 3305654 |
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| End bp | 3307978 |
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| Gene Length | 2325 bp |
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| Protein Length | 774 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637926121 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_532874 |
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| Protein GI | 90424504 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.404539 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGCCGAG TAACGCGCCG AGTTGGTTTG TTGGTCCATT TCGTGGTGTT CGGCGCGATC
CTCGCCGGGT GCAACACGAT CGCCGACACC GACGCCGACC AAGCCCCTGA TGTGTTCGAA
AGAATCCGCT CCATCGATCT GCTGCCGCGA TATCCCAGCC AAATGCGCCC GGCCGAACTG
AGCACGGGAC GTCCGATGAA GCCGACAATC TACCCGGCCG ATCCGGCGAA GAATGCGGCG
GCATCCGCCA CGGCACCGCC GGCTTCCGCG ACCAGCGGCG ACGGCTTTGA ATTGAATTTC
GAAAACACCC CGGTCGCCTC GGTCGCCAAG GTCGTGCTCG GCGACATCCT CGGGATCGGA
TACGTCATCG ACCCGCGCGT GCAGGGCAAC ATCAGCCTGT CGTCGGGGCG TCCGGTGCCG
AAGTCCGACA TCCTGTTCGC GCTCGAGAAC GCGCTGCGGA TCGGCGGCGT CGCGCTGGTG
CGCGATAACG CCGCCTACCG GCTGATGCCG CAGGCCGATG CGGTCGGGGT GGGATCGGCC
GATGCAGCCG AGCGGACCGA GGCGGGCTAC GGGATCTCGG TGGTGCCGTT GCAGCATGTT
TCGGCGCAAA CGGTCGTCAA ACTGGTCGAC AGCTTCGGCA CCAAGCCCGG CATGGTGCGG
GCCGACACCG GCCGCAACCT GATCCTGCTT CAAGGCACCG GCAGCGAGCG GCGCAATGCC
GTCGATCTCG TGCTCGGCTT CGATGCCGAT TGGATGCGCG GACAGTCGGT CGGAATATTC
CCGGTCCAGA ACAGCAACCC CGAGCCGATC ATTGCCGAAC TGGAAAAGAT CGTGGATTCC
GGTGAAGGCG GCGTGACGCA GAGCATGATT AAGTTCCAGG CCATCAGCCG GATGAACGCT
GTGCTTGCGG TGACCCGTAA GTCCGAACTG CTGCGTCGCG TCGAGACCTG GATTCAGCGC
CTCGACACGA CCAACACCGG GCGTTCGGCG ATCCACGTCT ACCGCGTCAA ATATGGCGAA
GCCCGACAGA TTGCGCGCGT CCTCAATGAG ATTTTTGGCG GTGGCGGCGC AACCGGGTCG
TCATCGGCGC TGGACAGCGC CGCCGGCCAA ATCGCGCCGG GGTCCGGTCT AGCGGCCAGT
TCGAGCAGCA GTTCCGCACT CAACCGGCTA TCGGCGGGCC AATCATCGAG CGGCTTTGCA
ACGGGCGCGA AGACCGCAAG CAGCGGCGCC GCCACGACGA ACGCGCCGGC AACGCCGTCC
GGCGCGCAGG GCAGCCTGTT CGATGCCCGC AGCGGCGGCT CGCCGGGTGG GCGTAGCGGA
ACGGCGGAGA GCAGCTCCGG GAACATATTG GACGGCATCC GGATCACCGC CGACACCGTC
AACAACGCGT TGCTGATCTA CGCGAGCCAG GAGCAATACA GCATCGTCGA GCGAACCGTA
CGACAAGTCG ACCAACCTCA GCTCCAGGTC GCCATCGATG CCACGATTGC CGAAGTCACG
CTGACCGACG ACCTGCAGTT CGGCGTTCAG ACCTACCTCA CCAGCCGCGA TTTCGGAATG
CCGGCAGACC GCGGATCGCT CGGCACCGCG TCAAGTTCGG CGCTGATCAG CGCCGCCAGC
GACGTCGTGC TCAATCGCGC AATCCCCGGC TTCAATTTCC TGGTCGGTTC GGGATCCTCG
CCGAAGGCAA TCCTCAACGC CCTGCACGCA ATCACCGAGG TCAAAGTGCT GTCGAATCCC
TCGCTGGTGG TGATCGACAA TCAGGTCGCG ACTCTTCAGG TCGGCGACGA GATCCCGATC
CAGACCGGCA GCGCCACCGT GCTCAGCAGC AGCAATACGA TCGCGAATAC CACCGATTAT
CGCCGCACGG GAATCCTGCT GCAGGTCGTG CCGCGCATCA ACGCCAACGG CAATGTCAGG
CTGGAGATCG AGCAGGAGAT CAGCAATCCG GTCGCGAGCT CGTCAACCTC GTCGTCTTCA
TCGACCTCGA CCAACTCGCT GACGCCAACG GTGTCGACCC GCAAGGTCAA GAGTTCGGTA
GCGGTCGCCA GCGGCCAGAC CGTGCTGCTC GCCGGTCTGA TCAGCGATAC CCAGAACAAA
ACCCGGTCCG GCATTCCGGG GCTCGACCAG CTTCCAGGGG TCGGCGACGT CTTCTCGCAG
ACCGAGAAGA TAATGAAGCG AACCGAATTG ATCATCTTCA TCCGTCCGCA GATCATTCGC
GACGGTTCGG ACGCGCATTT CGTCGCCGAG GAACTGCGTA CCAAACTTCG CGGCACGATC
GGGGCGGTCG GGTCGGGACA AGCCGTCCCC GCCAAATACC GCTGA
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| Protein sequence | MGRVTRRVGL LVHFVVFGAI LAGCNTIADT DADQAPDVFE RIRSIDLLPR YPSQMRPAEL
STGRPMKPTI YPADPAKNAA ASATAPPASA TSGDGFELNF ENTPVASVAK VVLGDILGIG
YVIDPRVQGN ISLSSGRPVP KSDILFALEN ALRIGGVALV RDNAAYRLMP QADAVGVGSA
DAAERTEAGY GISVVPLQHV SAQTVVKLVD SFGTKPGMVR ADTGRNLILL QGTGSERRNA
VDLVLGFDAD WMRGQSVGIF PVQNSNPEPI IAELEKIVDS GEGGVTQSMI KFQAISRMNA
VLAVTRKSEL LRRVETWIQR LDTTNTGRSA IHVYRVKYGE ARQIARVLNE IFGGGGATGS
SSALDSAAGQ IAPGSGLAAS SSSSSALNRL SAGQSSSGFA TGAKTASSGA ATTNAPATPS
GAQGSLFDAR SGGSPGGRSG TAESSSGNIL DGIRITADTV NNALLIYASQ EQYSIVERTV
RQVDQPQLQV AIDATIAEVT LTDDLQFGVQ TYLTSRDFGM PADRGSLGTA SSSALISAAS
DVVLNRAIPG FNFLVGSGSS PKAILNALHA ITEVKVLSNP SLVVIDNQVA TLQVGDEIPI
QTGSATVLSS SNTIANTTDY RRTGILLQVV PRINANGNVR LEIEQEISNP VASSSTSSSS
STSTNSLTPT VSTRKVKSSV AVASGQTVLL AGLISDTQNK TRSGIPGLDQ LPGVGDVFSQ
TEKIMKRTEL IIFIRPQIIR DGSDAHFVAE ELRTKLRGTI GAVGSGQAVP AKYR
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