| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2776 |
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| Symbol | secD |
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| ID | 3970154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3013506 |
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| End bp | 3015110 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637925886 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_532643 |
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| Protein GI | 90424273 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.336703 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.245371 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGTATT TCACGCGGTG GAAGGCGCTG GCGATCATTC TGACCGCGCT GGCGGTCTGC
CTATGCGCGG TTCCGAATTT CTTCCCGGAA GCCACCGTCA AGACCTGGCC GAAATGGGCG
CAGCGCCATC TGGTGCTGGG GCTCGATCTG CAGGGCGGCT CGCACATCCT GCTCGAGGTC
GATTCCAACT CGGTGCGCAA GGACAAGCTC GACCAGGTCC GCGACGACAC CCGCCGCACC
CTGCGCGATG CCAAGATCCC CTACACCGGC CTTGCGGTGC GCAACGACGC CGTCGAAGTA
CGGATTTCCA AGGACAGCGA CGTTGCGACC GCGCTCAGCA AGCTGCGTGA GCTGTCGCAA
CCGCTCGGCG GCCTGATGGG GCAGAGCGGC CAGCGCAACC TTGAGGTCTC CGACGCCGGC
TCCGGGTTGA TCCGGCTCGC GGTCACCCAG GCGGCGATCA CCGAGCGGAT CCGGCAGTCG
GTCGAACAGT CGATCCAGAT CGTCGAGCGC CGCGTCAATG AACTCGGCAC CGTCGAGCCG
TTGATCCAGC GCCAGGGCAT CGACCGTATT CTGGTGCAGG TGCCCGGCCT GCAAGATCCG
ACCCGGCTGA AGGAACTGCT CGGCAAGACC GCCAAGCTGG ATTTCCGCAT GGTGGATCCC
ACGGTGCCGG CGGATCAGGT GCGGCAGGGC GGCGGCGTGC CGCCGGATTC CGACCTGTTG
ATGGGCGCGC AGGCCCCGAA ACAGCCCTAC GTCATCAAAA AGCAGGTGCT GGTGTCGGGC
GGCGACCTCA CCGACGCGCA GCCCGGCTTC GACCAGCGCT CCGGCGAGCC GATCGTCTCG
TTCCGCTTCA ACACCTCCGG CGCGCGCAAA TTCGCCCAGG CCACCACCGA CAATGTCGGG
CAACCGTTCG CGATCGTGCT CGACAACGAG GTGATCTCGG CGCCGGTGAT CCGCGAGCCG
ATCACCGGCG GCTCCGGGCA GATTTCCGGC AGCTTCACCG TGCAGCAGGC CAACGACCTC
GCCATCCTGC TGCGCGCCGG CGCCTTGCCC GCGCCGCTCA CCATCATCGA GGAGCGCACC
GTCGGCCCCG GGCTCGGTCA GGACTCGATC GAGAAGGGCG AACTCGCCGC CTATGTCGGC
TCGATCCTCG TCATCGTGTT CATGCTCTTG ACCTACCGGC TGTTCGGCGT GTTCGCCAAC
ATCGCAGTCG CCATCAACGT GGCGATGATC TTCGGCGTGC TGTCGCTTTT GAATGCGACG
CTGACGCTGC CCGGCATCGC CGGCATCGTG CTGACCGTCG GCATCGCGGT CGACTCCAAC
GTGCTGATCT ACGAGCGTAT CCGCGAGGAA ATCCGCGGCG GCCGCACCGC GATCTCGGCG
ATCGACGCCG GCTTCAAGCG CGCGCTGTCG ACGATTCTGG ATTCCAACAT CACCACCTTC
ATCGCCGCGG CGGTGCTGTT CTACATCGGC ACCGGACCGG TGCGCGGCTT CGCCGTGACG
CTCGGCATCG GCATCCTCAC CACGGTGTTC ACCGCCTTCA CGCTGACCCG CCTGATCGTC
GCGGCTTGGG TGCGGTGGAA GCGGCCGCAC AGCGTGCCGA TTTGA
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| Protein sequence | MLYFTRWKAL AIILTALAVC LCAVPNFFPE ATVKTWPKWA QRHLVLGLDL QGGSHILLEV
DSNSVRKDKL DQVRDDTRRT LRDAKIPYTG LAVRNDAVEV RISKDSDVAT ALSKLRELSQ
PLGGLMGQSG QRNLEVSDAG SGLIRLAVTQ AAITERIRQS VEQSIQIVER RVNELGTVEP
LIQRQGIDRI LVQVPGLQDP TRLKELLGKT AKLDFRMVDP TVPADQVRQG GGVPPDSDLL
MGAQAPKQPY VIKKQVLVSG GDLTDAQPGF DQRSGEPIVS FRFNTSGARK FAQATTDNVG
QPFAIVLDNE VISAPVIREP ITGGSGQISG SFTVQQANDL AILLRAGALP APLTIIEERT
VGPGLGQDSI EKGELAAYVG SILVIVFMLL TYRLFGVFAN IAVAINVAMI FGVLSLLNAT
LTLPGIAGIV LTVGIAVDSN VLIYERIREE IRGGRTAISA IDAGFKRALS TILDSNITTF
IAAAVLFYIG TGPVRGFAVT LGIGILTTVF TAFTLTRLIV AAWVRWKRPH SVPI
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