| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2568 |
|---|
| Symbol | |
|---|
| ID | 3970944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2786749 |
|---|
| End bp | 2788143 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637925678 |
|---|
| Product | Type I secretion outer membrane protein, TolC |
|---|
| Protein accession | YP_532437 |
|---|
| Protein GI | 90424067 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGAGT TTCGAAGACA AGCTGCCGGC ACTGCAATCG CCGGACTGAT TCTGGCTCAT
CTCGGTGCGA CGCCGGTTCT GGCCGACACG ATCGAAGCGG CGCTGGTTCG CGCCTATCAG
AGCAATCCGC AGCTCAACGC GCAGCGCGCC TCGGTGCGCT CCACCGACGA AAACGTGCCG
CAGGCGCTGT CCGGCTATCG GCCGCGCGTC TCGGTGACCG CGAGCGGTGG CTATCAATAC
ACCGACGTGA TCGCCACCCA GGGCGGCCAG ACCAACCGCA TCCACGGTGA TACGGCGCCG
CGCGCGGTCG GCGTCACCGC CACCCAGACA TTGTTCAACG GCAACCAGAC CGCGAATCGC
ACCCGTGCGG CGGAAAGTCA GGTGTCGTCG GCCCGCGAAG GACTGCGCGT GCTGGAGCAG
AGCGTGATGC TCTCGGCGGC GACGATCTAC ATGGACTATC TGCGCGATTC GGCGATCGTC
GAAGTGCAGC GCAGCAACGT GCGGGTGCTC GAGCAGACCC TGAAACAGAC CCGCGACCGC
TTCAACGTCG GCGAGGTGAC CCGCACCGAC GTGGCGCAGT CCGAGGCGCA ACTCGCCGCC
GGCCGCACCC AGCAGCTCAC CGCCGAATCC AACCTGACTA CGACGCGGTC GAACTTCCGC
CGCATCATCG GCAACGAACC CCAGGCGCTG GCGCCGGGCT CGCCGGTGGA TCGTTTCCTG
CCGGCGACGC TGCCCACCGC CATCGAACTC GGCCTGACCG AAAATCCCAA CGTCACCGCC
TCGATGTTCG GCATCGACGT CAGCTTCCTC AACGTCAAGG TCAACGAGGG CGCGCTGTTT
CCGACGCTGA CGCTGCAGGG CAACGCGCAG CAGGGCTACG AACAGACCAT CAGCACGCCG
CGCCAGTTCG TCGCCTCCGC GGTGGCGCAG CTCACGGTTC CGATCTATCA GGGCGGCGCC
GAATACGCGC TGATCCGGCA GTCCAAGGAA TCCTTGGCGC AGCAGCGGCT CAATCTCGAG
CAGGTCCGCG ACCAGACCCG CGCCAGCGTG GTGCAGGCCT GGGGTCAGCT GTTGGCCGGC
CGCGCCCAGG TGTCCTCGGC GCAGGCCCAG GTCGCGGCCT CGGAGATCGC GCTGAACGGC
GTCCGCGAGG AAGCCCGCGC CGGCCAGCGC ACCACGCTCG ACGTGTTGAA CGCGCAGCAG
GCGCTGGTCA ACGCCCGGGT GGCGCTGGTC ACCGCGCAGC ACGACCGCGT GGTGGCGTCC
TACGCCGTGC TCAACGCCGT CGGCCGGCTG TCGCCGCAGG TCTTGAAGCT CAGCACCACG
GTGTATGACC CGAGCGTGCA CTACCAGCAG GTCCGCGACA GCTGGTTCGG TGTTCGCACC
CCGGACGGTC GCTGA
|
|---|
| Protein sequence | MGEFRRQAAG TAIAGLILAH LGATPVLADT IEAALVRAYQ SNPQLNAQRA SVRSTDENVP
QALSGYRPRV SVTASGGYQY TDVIATQGGQ TNRIHGDTAP RAVGVTATQT LFNGNQTANR
TRAAESQVSS AREGLRVLEQ SVMLSAATIY MDYLRDSAIV EVQRSNVRVL EQTLKQTRDR
FNVGEVTRTD VAQSEAQLAA GRTQQLTAES NLTTTRSNFR RIIGNEPQAL APGSPVDRFL
PATLPTAIEL GLTENPNVTA SMFGIDVSFL NVKVNEGALF PTLTLQGNAQ QGYEQTISTP
RQFVASAVAQ LTVPIYQGGA EYALIRQSKE SLAQQRLNLE QVRDQTRASV VQAWGQLLAG
RAQVSSAQAQ VAASEIALNG VREEARAGQR TTLDVLNAQQ ALVNARVALV TAQHDRVVAS
YAVLNAVGRL SPQVLKLSTT VYDPSVHYQQ VRDSWFGVRT PDGR
|
|---|
| |