Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2433 |
Symbol | dnaE |
ID | 3971421 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 2632522 |
End bp | 2636079 |
Gene Length | 3558 bp |
Protein Length | 1185 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637925541 |
Product | DNA polymerase III subunit alpha |
Protein accession | YP_532303 |
Protein GI | 90423933 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.184139 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTGGCGAC CCCGGTCGCC GCCGTCCTCA GTTCCCTGGA TTGACACCGC GCCCATGACC AATGCCGGCT TCGTTCATCT GCACGTGCAT TCGGCGTATT CGCTGCTGCG GGGCTCGATC AAGGTCGCCA AGCTGTGTGA GCTCGCCAAG GCCGACCATC AGCCGGCGCT GGCGCTGACC GACACCGACA ACATGTTCGG GGCGCTGGAA TTCTCCGAGA AGATGGCGGG CTACGGCATC CAGCCGATCG TCGGCTGCGA ATTGGCGGTC GATTTCGGCG ATCAGGATCC CAACGCCCGC AACGCGCTTT CGGCGGCGCC GTCGCGGATC GTGCTGCTGG CGGCGCGCGA GCGCGGCTAC CGCAGTCTGA TCAAACTGAA TTCGCGGGCG TTCCTGGAAA CCCCGGTGAA CCAGACGCCG CACATCAAGC TGGATTGGCT GAACGGCGAG GCCGAGGATC TGATCGCGCT GAGCGGCGGC CCGGAGGGGC CGATCTCGCT GGCCTTCACC GCCGACCAGG CGGGCTTGGC GGAAGCCCGC TGCGACCGTT TGGCGGCGCT GTTCGGCGAC CGGCTGTATA TCGAATTGCA GCGTCACGGC GTCGACGCCG AGCGCCGCGC CGAGGCGGCG CTGATCGATC TGGCCTACGC CAAGGGGCTG CCGCTGGTGG CGACCAACGA GCCGTATTTC GCCACCAATG ACGATTACGA GGCCCATGAC GCGCTATTGT GCATCGCCGG CGGCCGGCTG GTGGCGGAGA CCGACCGTCC GCAGCTCACC CCGGATCACC GCTTCAAGAC CCGGGCCGAA ATGGCGGTGC TGTTCGCCGA CCTGCCGGAG GCGCTGGCCT CCACCGTGGA AATCGCCGAG CGCTGCGCGT TCCGGCCGCG CACCCGCAAG CCGATTCTGC CGCATTTCAC CCTTGGCGCC GGCACCGGCA GCCATGCCGC GGCTGCCTCC AGCAACGAAG CCGACGAGGT GCGGGCGCAG GCCGAGCAGG GGCTGATCAA GCGGCTGCAG GTGCATGGCG TGGCGAAAGG CGCCACCGAG GAGGAGTACC GCGCGCGGCT GGAATTCGAA CTCGGCATCA TCACCCGGAT GCAATATGCC GGCTACTTTC TGATCGTCGG CGACTTCATC AAATGGGCCA AGGAAAACGG CATTCCGGTC GGTCCGGGCC GCGGCTCCGG CGCAGGCTCG CTGGTGGCCT ATGCGCTCAC CATCACCGAC CTCGATCCGA TCCGCTTCGG TCTGCTGTTC GAGCGCTTCC TCAATCCCGA GCGCGTGTCG ATGCCCGACT TCGACATCGA CTTCTGCCAG GACCGCCGCG GCGAAGTGAT CGAATATGTG CAGCGCCGCT ACGGCCGCGA TCAGGTGGCG CAGATCATCA CCTTCGGCAC GCTGCAGGCG CGCGGCGTGC TGCGCGACGT CGGCCGGGTG CTGCAGATGC CCTACGGCCA GGTCGACAAG CTGACCAAGC TGGTGCCGCA AAATCCGGCG GCGCCGGTGA CGCTGAAGCA GGCGATCGAA AGCGAGCCGA AGCTGCAGGC GTTCCGCGAC GAAGACCCGG TGGTGGCGCG CGCCTTCAAC ATCGCGCAGC GGCTCGAGGG CTTGACCCGC CACGCCTCGA CCCACGCCGC CGGCATCGTG ATCGGCGACC GCCCGCTCTC CGAGCTGGTG CCGATGTATC GCGATCCGAA ATCCGACATG CCGGTCACCC AGTTCAACAT GAAATGGGTG GAGCCGGCGG GGTTGGTCAA GTTCGACTTC CTCGGCCTGA AGACGCTGAC CACGCTCGAC GTCGCGGTGA AGCTGTTGAA GCAGCGCGGC GTCGTGGTGT CGCTGCCGAC GGTGCCGCTC GACGATCCCG ACACCTTCGC GATGCTCGGG CGCGGCGACG TGGTCGGCGT GTTCCAGCTG GAAAGTCAGG GCATGCGGCG CGCGCTGATC GACATGCGGC CCGACCGCTT CGAGGACATC ATTGCCCTCG TGGCGCTGTA TCGGCCGGGC CCGATGGCCA ACATCCCGAC CTATTGCGCC CGCAAGCACG GCGACGAGGA GCCGGAATAT CTGCACCCGA TTCTGGAGTC GATCCTGAAG GAGACCTTCG GCGTCATCAT CTATCAGGAA CAGGTGATGC AGATCGCCCA GGTGATGGCC GGCTACTCGC TCGGCCAAGC CGACCTGTTG CGCCGCGCGA TGGGCAAGAA GATCCGCGCC GAGATGGAGA AGCAGCGCGC CGGCTTCATC GCCGGGTCGG TCGAGCACGG CGTGCCCAAG GCGCAGGCCG ACGCCATCTT CGAACTGCTC GCGAAGTTCG CCGACTACGG CTTCAACAAG AGCCACGCCG CGGCCTACGC GCTGGTGTCG TACCACACCG CCTATATGAA GGCGCATTAC CCGGTGGAGT TTCTGGCGGC GTCGATGACG CTGGAAATCC ACAACACCGA CAAGCTGTCG GAATTCCGCG CCGAGGCGCA GCGGCTCGGC ATCAAGCTCG AGGCGCCGAG CGTCAACCGC TCCGGCGCCA CCTTCGAGGT CGCCGACGGC GTGATCTACT ACGCGCTCGC CGCGCTGAAA GGCGTCGGGG CGCAGGCGGT CGAGCTGATC GTCGAGGGAC GCAAGGGCGG TCTGTTCAGC TCGCTGGCGG ACTTCGCCGC CAAGGTGAGC CCGAAGGCGA TCAACAAGCG GGTGATCGAG AGTCTCGCCG CCGCCGGCGC GTTCGACGGG CTCAATCCGA ACCGCGCCGC GGTGTTCGGC GGCGCCGACG CCATCATGGC GGCCTGCCAA CGCCACCATG AGGCGGCGGC GATGGGGCAG AACGACATGT TCGGCGGCAT GGCCGATGCA CCGACGATCA TGCTGCCGCA GCTCGAGGCC TGGCTGCCGG CGGAGCGGCT GCGCCGCGAA TACGACGCCA TCGGCTTCTT CCTGTCCGGG CATCCGCTCG ACGACTACGC CACCGCGCTG AAGCGGCTGC GGGTGCAGTC CTGGGCCGAG TTCTGCCGCG CGGTGAAGTC TGGCGCCACC GCCGGCAAGG TCGCCGCCAC CGTGGTGTCG CGGATGGAGC GGCGCACCAA GACCGGCAAC AAGATGGGCA TCCTCGGGCT GTCGGATCCC ACCGGGCATT TCGAGGCGGT GCTGTTCTCC GAAGGCCTCG CGCAATATCG CGAGGTGCTG GAGCCCGGCG GCGCGGTCTT GCTGCAGCTC GGCGCCGAAC TGCAGGGCGA GGACGTCCGC GCCCGCATCC TGCACGCCGA ACCGCTCGAT GACGCCGCCG CCAAGACCCA GAAGGGGCTG CGGATCTTCC TGCGCGACAC CAAGCCGCTG GAGTCCATCG CCAAACGGCT GCAGATGCCG GAGGCGGGTG GCGGCGGATC GGCGACGCCG GCCAGCGAAC CGAAGCGGCC GGGCGGCGAC GGCGAGGTGA CGCTGGTGAT GATGCTGGAC CTCGAGACCG AGGTGGAAAT GAAGCTGCCC GGCCGGTTCC GGGTGTCGCC GCAGATCGCC GGCGCGATCA AGGCGGTGCA GGGCGTGGTC GACGTGCAGA CCGTGTAG
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Protein sequence | MWRPRSPPSS VPWIDTAPMT NAGFVHLHVH SAYSLLRGSI KVAKLCELAK ADHQPALALT DTDNMFGALE FSEKMAGYGI QPIVGCELAV DFGDQDPNAR NALSAAPSRI VLLAARERGY RSLIKLNSRA FLETPVNQTP HIKLDWLNGE AEDLIALSGG PEGPISLAFT ADQAGLAEAR CDRLAALFGD RLYIELQRHG VDAERRAEAA LIDLAYAKGL PLVATNEPYF ATNDDYEAHD ALLCIAGGRL VAETDRPQLT PDHRFKTRAE MAVLFADLPE ALASTVEIAE RCAFRPRTRK PILPHFTLGA GTGSHAAAAS SNEADEVRAQ AEQGLIKRLQ VHGVAKGATE EEYRARLEFE LGIITRMQYA GYFLIVGDFI KWAKENGIPV GPGRGSGAGS LVAYALTITD LDPIRFGLLF ERFLNPERVS MPDFDIDFCQ DRRGEVIEYV QRRYGRDQVA QIITFGTLQA RGVLRDVGRV LQMPYGQVDK LTKLVPQNPA APVTLKQAIE SEPKLQAFRD EDPVVARAFN IAQRLEGLTR HASTHAAGIV IGDRPLSELV PMYRDPKSDM PVTQFNMKWV EPAGLVKFDF LGLKTLTTLD VAVKLLKQRG VVVSLPTVPL DDPDTFAMLG RGDVVGVFQL ESQGMRRALI DMRPDRFEDI IALVALYRPG PMANIPTYCA RKHGDEEPEY LHPILESILK ETFGVIIYQE QVMQIAQVMA GYSLGQADLL RRAMGKKIRA EMEKQRAGFI AGSVEHGVPK AQADAIFELL AKFADYGFNK SHAAAYALVS YHTAYMKAHY PVEFLAASMT LEIHNTDKLS EFRAEAQRLG IKLEAPSVNR SGATFEVADG VIYYALAALK GVGAQAVELI VEGRKGGLFS SLADFAAKVS PKAINKRVIE SLAAAGAFDG LNPNRAAVFG GADAIMAACQ RHHEAAAMGQ NDMFGGMADA PTIMLPQLEA WLPAERLRRE YDAIGFFLSG HPLDDYATAL KRLRVQSWAE FCRAVKSGAT AGKVAATVVS RMERRTKTGN KMGILGLSDP TGHFEAVLFS EGLAQYREVL EPGGAVLLQL GAELQGEDVR ARILHAEPLD DAAAKTQKGL RIFLRDTKPL ESIAKRLQMP EAGGGGSATP ASEPKRPGGD GEVTLVMMLD LETEVEMKLP GRFRVSPQIA GAIKAVQGVV DVQTV
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