Gene RPC_2334 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_2334 
Symbol 
ID3972175 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp2536559 
End bp2537713 
Gene Length1155 bp 
Protein Length384 aa 
Translation table11 
GC content67% 
IMG OID637925441 
Productribonuclease D 
Protein accessionYP_532206 
Protein GI90423836 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID[TIGR01388] ribonuclease D 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.323596 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCTGA TCACCACCAC CGACCAACTC GCCGCGGTTT GCGACCGCCT TGCCAAGCAC 
CCGGCGATTA CCGTCGACAC CGAGTTTCTC CGCGAGACCA CCTACTATCC GCTGCTCTGC
GTGGTGCAGA TGGCGAGCGC CGAGGACGCC GTGGTGGTCG ATACCCTGGC GCCGGGCATC
GACCTCAAGC CGTTCTTCGA TCTGATGGCG AATGACGACG TGCTGAAGGT GTTTCATGCC
GCCCGGCAGG ACATCGAAAT CGTCTGGCAC CGCGCCGGCA TCGTGCCGCA TCCGATCTTC
GACACCCAGG TCGCCGCGAT GGTGCTGGGC TATGGCGACT CCATCGCCTA CGACCAGCTG
GTCGAGCGCA TCACCGGCCA CCGCCCCGAC AAGACCCACC GTTTTACCGA TTGGGCGCGC
CGGCCTTTGA CCGATGAGCA GCTGCATTAC GCGGTGTCCG ACGTCACCCA TCTGCGCGAC
GTGTTCGCCG CCCTCGACGC CGACCTGAAG AAGCGCGGCC GCAGCGACTG GGTCAGCGAG
GAGATGGAAG TCCTCACCTC GCCCAAGACC TACGACTTCC ACCCCGAACG CGCCTGGGAG
CGGCTGAAGA CCCGGGTGCG CAAGCCGAAA GAGCTGGCGG TGCTGATGGA AGTCGCGGCC
TGGCGCGAGC AGGAAGCGCA GAGCCGCGAC GTGCCGCGCT CGCGCGTGCT GAAGGACGAC
ACCGTCGGCG ACATCGCCAC CCATGCGCCG ACCAGCCTGG AGCGGCTGGC CGGGCTGCGC
TCGCTGCCGA AGGGATTCGA TCGCTCGAAA TGGGGCGCCG ATATCGTCGC GGCGGTGCAG
CGCGGCCTCG CCCGCGATCC CGCCACCCTG CCGAAGATCG AGAAGCCGCG CGGCAACGGC
AATGGTGCGG CAATCGTCGA ATTGTTGAAG GTGCTGCTGC GGATGACCTC GGAGCGCCAC
GCCGTCGCCA GCAAGGTGAT CGCCACGGTG GACGATCTCG AGCAGATCGC CGCCGACGAC
CATGCCGACG TCGGCGCGCT GCAGGGCTGG CGCCGCGAAC TGTTCGGCGA GGCCGCCCTC
GCCCTCAAGC AGGGCCGGCT CGCATTGGCG ATCGAAAAAG GCAAAGTGGT GCGGGTCGAG
CGAACCGAGG TTTAG
 
Protein sequence
MDLITTTDQL AAVCDRLAKH PAITVDTEFL RETTYYPLLC VVQMASAEDA VVVDTLAPGI 
DLKPFFDLMA NDDVLKVFHA ARQDIEIVWH RAGIVPHPIF DTQVAAMVLG YGDSIAYDQL
VERITGHRPD KTHRFTDWAR RPLTDEQLHY AVSDVTHLRD VFAALDADLK KRGRSDWVSE
EMEVLTSPKT YDFHPERAWE RLKTRVRKPK ELAVLMEVAA WREQEAQSRD VPRSRVLKDD
TVGDIATHAP TSLERLAGLR SLPKGFDRSK WGADIVAAVQ RGLARDPATL PKIEKPRGNG
NGAAIVELLK VLLRMTSERH AVASKVIATV DDLEQIAADD HADVGALQGW RRELFGEAAL
ALKQGRLALA IEKGKVVRVE RTEV