Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2173 |
Symbol | |
ID | 3969155 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 2365523 |
End bp | 2369065 |
Gene Length | 3543 bp |
Protein Length | 1180 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637925281 |
Product | Outer membrane autotransporter barrel |
Protein accession | YP_532046 |
Protein GI | 90423676 |
COG category | [S] Function unknown |
COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain [TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.193519 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGACTG CTGACACCAT CCGAGGCCGG TCCGGCCCGT GCGGACGCGT CCTGCGCGGC CTGCTGACCT CGCTGTTGTC ACTCGGGTGT GTGCTCTGCC TGTTCGGCAC CGCTGCCCGC GCGATCGATG TCGGCAGTCG TGGCGATTGG GATAACGCCG TCGTAGCGGT CGGCGCGGCC GCCGCGGGGG CCACGGTCAC CATCAACATC ACCGCCGGCT TCACGCTGAC GAGTTCGCTG CCGCAGCTGT TGGCCGTCCA ACTCAACGTC ACCGTCAACG TCAACGGCAA CGGCCTGGTG ATCGACGGCG GCTCGACCTA TCAGGGCATC CAGGTCAACG GCGCCAATGC CTTGACCGTC AACATTTCCA ATCTGTCGGT GATCAACACC AAGGCGACCG GCGGCAGCGG CTTGGCCGGG GAGAACGGCT ATTACAGCGG CGGGCTGTCC TACGGCTCGG GCGGCGGTGG CGGCGGCGGG CTCGGCGGCG GCGGCGGCCT CTTGGTCGGC AGCGGCGCCA TCGTGACGCT GAGCGCGGTG ACCTTCACCG GCAACATCGC GCAAGGCGGC GCCGGCGGCG TGGGCGGTTC GGCACAGAAT ACGGTTTCGG ATCCGGTCAA TGGCGGCAAT GGCGGTGCCG GCGGCGTCGC CAATAATTCC GGAGCGACCG GCGGCGGCGG CGCCGGCGGC ACCGGCGGCC ACACCGGCAC CCAGGGAACC GCCGGGTCGC CGGGAGCGGC GTTCGGCGAT GGCGGCGGCG GCGGCGGCGG CTCCGGCACC ACCGCGAGCA TCAACTACAC CTCGAATAAT CCCGGCGGCA GCGGCAATGC TAACGGCGGC GCCGGCGGGC AGGGCGGCGA CGGTGCCACC AACGCCAGCG GCGCCGGTGG ACCGGGGCCG GGCGCGGACG GCGGCAACGG CGGCGTCGGC GGCGGTGCCC GCGGCGGCGC GATCTATGTC GCCACCGGCG GCAGCCTGAC CATTCTCGAC ACCCCGGTCA ACGGCGCCAC TGCTATCGGC GGCGCCGGCG GCACCGGCGG CACCGGCACC GGTCCGAGTG CGATCCCCGG CGGCGCCGGC AGCACCGGCA GCACCGCCGG CGCCGGCATC TTTCTCAGCG GCGTGATGGC CAATATCGGA GTGTCGGCGG GCAACGTCAC CTATGCCAAC AGCATCGGCG GCACCGGCCT GACCACCGGC GGCGTCAACA CCGCGATCAC CAAGCTCGGC GCCGGCACGC TGGCGCTGTC GGCGACCAAT GATTTCACCG GCAATGTCGC GATCGCCGCC GGCACGCTGT CGATCGCCGC CACGGCCAAT CTCGGCAACG TCGCCAATGA CGTGGTGATC TCGGACGGCG CCGGCCTGGC CGTCACCGCG ACGACGACGC TGGCCGCTGC CCGTGCCTTC TTCATCGCAG GCACGTCCAC CATCGACGTC GCCAGCGCCA CCACCACGAC GCTGCAGGGC GTCGTCGGCA ACGGCACCTC GGCCGGCTCG CTGGTCAAGA GCGGCGACGG CACGCTGTTG CTGTCGGCGA CCAACACCTA CAGCGGCGCC ACCACGGTTT CCGGCGGCAC GCTGCGCGCC GGGGCGTCGA ATGCGATCCC GAGCGGCACC GCGATGACCG TCGCCAATGC CGCGACCTTC GACCTCAACG GCTTTGCGCG CGGGCTCGGC TCGCTGGCCG GCGCCGGCAC CGTCAGCAAT GGCGGCGGCA GCGCCGTCAC GCTGACCACC GGCAGCAACG GCACCGACAC CGTGTTCTCC GGCGTCGTGC AGAACGGCGT CAATGCGGTG TCGCTGACCA AGACCGGCGC CGGCCAGCTG ACGCTCGACG GCGCCAACGC CTATTCGGGC GCCACCACGG TCAACGCCGG CACGCTTTCG GTGAACGGTT CGATCGCGAG CTCGGCGCTG ACCAGCGTCA ATGCCGGCGC CACGCTCGCC GGCACCGGCA GCGTCGGCAA CACCACGATC AATGGCGGTA CACTCGCCCC GGGCAATTCG ATCGGCACGC TGAGCGTGAC CGGCAACCTC ACCCTCACGG CCGCCGCGAG CTACATGGTC GAAATCTCGC CGACCGCCTC CGACCGCACC AACGTCAGCG GCACAGCGAC GCTCGGCGGC GCCACGGTGA ATGCCAGTTT CGCGGCCGGC AGCTATGCCA ACAAGCAATA CACCCTGGTC AATGCCACCG GCGGCATCAT CGGCACCTTC GGGGCGCTCT CGAACAGCAA CCTGCCGTCC GGCTTCAAAT CCAGCCTCGG CTACGACGCC AATAACGCCT ATCTCGATCT GGTGCTCGAC CTGGCGCCGA CGCCTTCCCC GACCGGAGAC ACGCCTGCGG TCGGCCTCAA CGTCAACCAG GCCCGGGTCG CCAGCGCGCT GAGCAATTAC TTCGCCAGGG CCGGCAGCAT TCCGATGGTG TTCGGCGCGC TGACGCCGGC CGGGCTGAGC ATCGCGGCGG GCGAGCCGGC CACCGGCATG CAGCAGTCCA CATTCACTGC GATGACGCTG TTCATGGGCG TGCTGACCGA TCCGTTCGCC GCCGGACGCG GCGTCGATCC GTCGAGCGGC GCTGCGGCCT TCGCCGACGC GGCCGGCGAG CGCGGCGCGC CGCGTGGCGC CTTTGCGATG GTCGGCAAGG CGGTGCCGCA TCCGCTGCCG CGCCCGATCG TCGAGCCGCG CTGGAACGTC TGGGCCGCGG GCTTCGGCGG CTCGCAGACC ACCGACGGCA ACGCGTCGCA GGGATCCAAC CGCGCCACCT CGCGGCTGGC CGGCACCGCG GTCGGCGCCG ACTATTGGCT GTCGCCGATG ACCGTCGCTG GCGTGGCACT GGCGGGCGGC GGCAGCAGTT TCGGCGTCGA TGGATTGGGC AGCGGCCGTT CCGACCTGTT CCAGGCCGGC GCCTTCATCC GGCATCAGCG CGGCGCGGCT TACGTCACCG CCGCCGCCGC TTACGGCTGG CAGGACGTCA CCACCGACCG CACCGTCGCG CTCGGCGGGC TGGCGCAGTT GCACGGCAGC TTCAACGCCA ACGCCTATTC CGGCCGCGTC GAAGCCGGCA ACCGCTATCT GCTGCCGAGC TTCGGCGGAT TTGGCAGCTT CGGCCTGACG CCCTACGCCG CGGCGCAAGT CACCGCGTTC GATCTGCCGG CCTATGCCGA GCAGGCCAAT GCCGGCCCCA ACACCTTCGC GCTGGCCTAT GGCGCCAAGA CCGCCACCGC GACCCGCAGC GAACTGGGCC TGCGCAGCGA CAAGGCGTTC GCGCTCAACG CGGCGCTGTT GACGCTGCGC GGCCGCGTCG CCTGGGCGCA TGATTTCGAT ACCGACCGCA GCCTCGCCGC GACCTTCCAG ACGCTGCCGG GGGCGTCCTT CGTGGTCGGC GGCGCCAGGG TGGCGCGCGA TGCCGCGCTG ACCACGGCGC AGGCGGAACT GAGCTTCGCC GGCGGCATCT CGCTGCTGGC GAGCTTCGAG GGCGAGTTCT CCGACGTCAG CCGCTCCTAT GCCGGCAAGG GCGTGGTGCG CTACGCTTGG TGA
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Protein sequence | MTTADTIRGR SGPCGRVLRG LLTSLLSLGC VLCLFGTAAR AIDVGSRGDW DNAVVAVGAA AAGATVTINI TAGFTLTSSL PQLLAVQLNV TVNVNGNGLV IDGGSTYQGI QVNGANALTV NISNLSVINT KATGGSGLAG ENGYYSGGLS YGSGGGGGGG LGGGGGLLVG SGAIVTLSAV TFTGNIAQGG AGGVGGSAQN TVSDPVNGGN GGAGGVANNS GATGGGGAGG TGGHTGTQGT AGSPGAAFGD GGGGGGGSGT TASINYTSNN PGGSGNANGG AGGQGGDGAT NASGAGGPGP GADGGNGGVG GGARGGAIYV ATGGSLTILD TPVNGATAIG GAGGTGGTGT GPSAIPGGAG STGSTAGAGI FLSGVMANIG VSAGNVTYAN SIGGTGLTTG GVNTAITKLG AGTLALSATN DFTGNVAIAA GTLSIAATAN LGNVANDVVI SDGAGLAVTA TTTLAAARAF FIAGTSTIDV ASATTTTLQG VVGNGTSAGS LVKSGDGTLL LSATNTYSGA TTVSGGTLRA GASNAIPSGT AMTVANAATF DLNGFARGLG SLAGAGTVSN GGGSAVTLTT GSNGTDTVFS GVVQNGVNAV SLTKTGAGQL TLDGANAYSG ATTVNAGTLS VNGSIASSAL TSVNAGATLA GTGSVGNTTI NGGTLAPGNS IGTLSVTGNL TLTAAASYMV EISPTASDRT NVSGTATLGG ATVNASFAAG SYANKQYTLV NATGGIIGTF GALSNSNLPS GFKSSLGYDA NNAYLDLVLD LAPTPSPTGD TPAVGLNVNQ ARVASALSNY FARAGSIPMV FGALTPAGLS IAAGEPATGM QQSTFTAMTL FMGVLTDPFA AGRGVDPSSG AAAFADAAGE RGAPRGAFAM VGKAVPHPLP RPIVEPRWNV WAAGFGGSQT TDGNASQGSN RATSRLAGTA VGADYWLSPM TVAGVALAGG GSSFGVDGLG SGRSDLFQAG AFIRHQRGAA YVTAAAAYGW QDVTTDRTVA LGGLAQLHGS FNANAYSGRV EAGNRYLLPS FGGFGSFGLT PYAAAQVTAF DLPAYAEQAN AGPNTFALAY GAKTATATRS ELGLRSDKAF ALNAALLTLR GRVAWAHDFD TDRSLAATFQ TLPGASFVVG GARVARDAAL TTAQAELSFA GGISLLASFE GEFSDVSRSY AGKGVVRYAW
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